RetrogeneDB ID:

retro_nleu_1074

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397280.1:28049048..28049537(+)
Located in intron of:ENSNLEG00000017049
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS18
Ensembl ID:ENSNLEG00000006840
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1074
GGAGGCCTAAATGCCGCCTCTTGCGCTGCCTCCATGTCTCTAGTGATCCCTGAAAAGTTCCAGCATATTTTGCGACTACT
CAACACCAACATCGATGGGCAGTGGAAAACAGCCTTTGCCATCACTGCCATTAAGGGTGTGGGCCAAAGATATGTTCATG
TGGTGTTGAGGAAAGCAGACATTGACTGCACCAAGAGGGTGGGAGAACTCACTGAGGATGAGGTGGAACGTGTGATCACC
ATTATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTCTTGAACACACAGAAGGATGTAAAGGATGGAAAATATAG
CCAGGTCCTAGCCAATGGTCTGGACAACAAGCTCCATGAAGACCTGGAGCGACTGAAGAAGATTCGGGCCCATAGAGGGC
TGCGCCACTCCTGGGGCCTTCATGTCCAAAGTCAGCACACCAAGACCACTGGCCACCGTGGCTGCACTGTGGGTGTGTCC
AAGAAGAAA

ORF - retro_nleu_1074 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.34 %
Parental protein coverage: 93.14 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGGLHAAACAAAMSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGEL
GGL.AA.CAA.MSLVIPEKFQHILR.LNTNIDG..K.AFAITAIKGVG.RY.HVVLRKADID.TKR.GEL
RetrocopyGGLNAASCAASMSLVIPEKFQHILRLLNTNIDGQWKTAFAITAIKGVGQRYVHVVLRKADIDCTKRVGEL
ParentalTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGL
TEDEVERVITIMQNPRQYKIPDWFLN.QKDVKDGKYSQVLANGLDNKL.EDLERLKKIRAHRGLRH.WGL
RetrocopyTEDEVERVITIMQNPRQYKIPDWFLNTQKDVKDGKYSQVLANGLDNKLHEDLERLKKIRAHRGLRHSWGL
ParentalRVRGQHTKTTGRRGRTVGVSKKK
.V..QHTKTTG.RG.TVGVSKKK
RetrocopyHVQSQHTKTTGHRGCTVGVSKKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1074 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 61 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000009507 retrocopies
Dipodomys ordii ENSDORG000000138256 retrocopies
Gorilla gorilla ENSGGOG000000065715 retrocopies
Loxodonta africana ENSLAFG000000321731 retrocopy
Macaca mulatta ENSMMUG000000038671 retrocopy
Monodelphis domestica ENSMODG000000142104 retrocopies
Mus musculus ENSMUSG000000086682 retrocopies
Nomascus leucogenys ENSNLEG00000006840 10 retrocopies
Oryctolagus cuniculus ENSOCUG000000105461 retrocopy
Procavia capensis ENSPCAG000000058542 retrocopies
Pongo abelii ENSPPYG0000002595314 retrocopies
Pan troglodytes ENSPTRG000000180391 retrocopy
Rattus norvegicus ENSRNOG000000285054 retrocopies
Sarcophilus harrisii ENSSHAG000000068572 retrocopies
Sarcophilus harrisii ENSSHAG000000086581 retrocopy



Copyright © RetrogeneDB 2014-2017