RetrogeneDB ID: | retro_nleu_1126 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397282.1:29060388..29061847(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IMPDH2 | ||
Ensembl ID: | ENSNLEG00000006743 | ||
Aliases: | None | ||
Description: | Inosine-5'-monophosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G1R4U5] |
Percent Identity: | 71.37 % |
Parental protein coverage: | 94.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | DGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCTP |
DGLTYN.FLILPG.IDF.AD.VDLTSALT.KITLKTPL.SSPMDTVTEA.M..AMAL.GGIGFIHHNCTP | |
Retrocopy | DGLTYNNFLILPGFIDFIADEVDLTSALTWKITLKTPLISSPMDTVTEADMGVAMALMGGIGFIHHNCTP |
Parental | EFQANEVRKVKKYE-QGFITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFL |
EFQA.EV.KVKK.....FI.DPVVLSP...V.D..EAK..HGF.GIPIT..G.MGS.LV.I..SRD..FL | |
Retrocopy | EFQAKEVWKVKKFN<RSFIMDPVVLSPSHTVGDMLEAKLQHGFSGIPITERGTMGSKLVDIVTSRDVNFL |
Parental | KEEEHDCFLEEIMTKREDLVVAPAGITLKEANEILQ-RSKKGKLPIVNEDDELVAIIARTDLKKNRDYPL |
.E..H...L.E..T.R..LVVAPAG..LKEANEILQ.RSKKGKLPI.....ELVAIIA.T..KKN.DYPL | |
Retrocopy | AEKDHITLLSEVTTPRIELVVAPAGVVLKEANEILQ>RSKKGKLPIISDRNELVAIIAHTNMKKN*DYPL |
Parental | ASKDTKKQLLCGAAIGTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKEKYPNLQVIGGNVV |
ASKD...QLLC.AA.GT.EDDKYRLDLL.Q.GV...VLD.SQGNS..QI.M..YIK.KYP.LQVIGGN.V | |
Retrocopy | ASKDSHRQLLCRAAVGTCEDDKYRLDLLTQVGVNIIVLDLSQGNSSYQIAMVHYIKQKYPHLQVIGGNKV |
Parental | TAAQAKNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAK |
TAAQAKNL.D..V..L.VGMG..SICITQEV.A.GRPQ.TAVYKV.EYARRFGVP.IADGGIQ..GH..K | |
Retrocopy | TAAQAKNLTDPCVEGLHVGMGCSSICITQEVMAYGRPQGTAVYKVAEYARRFGVPIIADGGIQAMGHVVK |
Parental | ALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSG |
ALALGASTVMMGSLLAATTE...EYFFSDG..LKKYRGMGSLDA..K..SSQ..YF.E..K.K.AQGVS. | |
Retrocopy | ALALGASTVMMGSLLAATTEVLSEYFFSDGVWLKKYRGMGSLDALEKSSSSQKQYFIEGYKVKIAQGVSS |
Parental | AVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGEL-KFEKRTSSAQVEGGVHSLHSYEKRL |
..QDKGS...FVPYLIAGIQH.CQD.GA.SL.......YSGEL.KF.K.T..AQ..GGV..L.SY.KRL | |
Retrocopy | SIQDKGSVQNFVPYLIAGIQHGCQDTGARSLSVLWSILYSGEL>KFQKWTMLAQIRGGVQGLLSYKKRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000009844 | 1 retrocopy | |
Homo sapiens | ENSG00000178035 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013245 | 1 retrocopy | |
Mus musculus | ENSMUSG00000062867 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006743 | 7 retrocopies |
retro_nleu_1126 , retro_nleu_1371, retro_nleu_1378, retro_nleu_1591, retro_nleu_2183, retro_nleu_2188, retro_nleu_359,
|
Nomascus leucogenys | ENSNLEG00000012341 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013884 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014908 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000031965 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000017349 | 2 retrocopies |