RetrogeneDB ID:

retro_nleu_1269

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397286.1:27054628..27055051(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FAM195A
Ensembl ID:ENSNLEG00000008117
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1269
ATGTACACCATCACCAAAGGGCCCAGCAAGCTAGTGGCGCAGTGCCGCACAGGTCTCAAGCAGCAACAGGTGGAGGGCCA
GCTCCACTAGCTCCTGAAACGCCGGCAGCCCCCGCCACCGACCTTGCAGCCCCAGCGGGCGCAGCCCTTCGCGCAGCCGC
CAGGACCCTGGCCCCTGCCAAGTCCAGGCCCAAGGCTTGTGTTAAATCGTGTGAATGGCCGGCGTGCCCCCTCCAAGTCC
CCATCCCTCCAGGGGACCCAGGAGACCTACACACTGGCTCACAAGGAGAATGTCCTCTTTGTGTCCGAAGCCTGGCAGCA
GGTGCAGCAGCAGCTGGATGGTGGCCCAGCCAGTGAGGGCGGGCCAAGGCCTGTGCAGTACGTGGAGAGGATCCCCAATC
CCCGGCTGCAGAACTTCGTTCCC

ORF - retro_nleu_1269 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.23 %
Parental protein coverage: 88.12 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMYTITKGPSKLVAQRRTGPTQQQVEGRLGELLKCRQPAPPTSQPPRAQPFAQPPGPWPLSSPGPRLVFNR
MYTITKGPSKLVAQ.RTG..QQQVEG.L..LLK.RQP.PPT.QP.RAQPFAQPPGPWPL.SPGPRLV.NR
RetrocopyMYTITKGPSKLVAQCRTGLKQQQVEGQLH*LLKRRQPPPPTLQPQRAQPFAQPPGPWPLPSPGPRLVLNR
ParentalVNGRRAPSTSPSLEGTQETYTLAHEENVRFVSEAWQQVQQQLDGGPAGEGGPRPVQYVERTPNPRLQNFV
VNGRRAPS.SPSL.GTQETYTLAH.ENV.FVSEAWQQVQQQLDGGPA.EGGPRPVQYVER.PNPRLQNFV
RetrocopyVNGRRAPSKSPSLQGTQETYTLAHKENVLFVSEAWQQVQQQLDGGPASEGGPRPVQYVERIPNPRLQNFV
ParentalP
P
RetrocopyP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1269 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000119791 retrocopy
Homo sapiens ENSG000001723661 retrocopy
Gorilla gorilla ENSGGOG000000137841 retrocopy
Nomascus leucogenys ENSNLEG00000008117 1 retrocopy
retro_nleu_1269 ,
Pan troglodytes ENSPTRG000000075481 retrocopy
Sus scrofa ENSSSCG000000079951 retrocopy



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