RetrogeneDB ID: | retro_sscr_433 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 14:52820283..52820727(-) | ||
Located in intron of: | ENSSSCG00000010053 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM195A | ||
Ensembl ID: | ENSSSCG00000007995 | ||
Aliases: | None | ||
Description: | family with sequence similarity 195, member A [Source:HGNC Symbol;Acc:14142] |
Percent Identity: | 85.14 % |
Parental protein coverage: | 94.23 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MYTITKGPSKLVAQRRTGPTQQQVENRLGELLKCR-HPAPPTPQPPRTQPPGPWPLSSPGPRLVFNRVNG |
MYTITKGPSKLV...RTGPT.QQVE.RL.ELLKC..HP..PT.QPPRTQPPGPWPLSSPG.RLVFNRVNG | |
Retrocopy | MYTITKGPSKLVP*HRTGPTHQQVESRLLELLKCY*HPEQPTLQPPRTQPPGPWPLSSPGLRLVFNRVNG |
Parental | RRPPATSPSLEGSQETYTLAHEENVRFVSEAWQQVEQQLGGGPAGESGPRPVQYVERTPNPRLQNFVPID |
R..PATSPSLEG.QET.T.AHEEN.RFVSEAWQQVEQQLGGGPA.ESGPRPVQYVERTPNPRLQNF.PI. | |
Retrocopy | RWTPATSPSLEGIQET*TSAHEENIRFVSEAWQQVEQQLGGGPASESGPRPVQYVERTPNPRLQNFMPIN |
Parental | LDEWWAQQ |
LDEWWAQ. | |
Retrocopy | LDEWWAQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 7 .43 RPM |
SRP014902_testis | 0 .00 RPM | 11 .88 RPM |
SRP018288_heart | 0 .00 RPM | 51 .50 RPM |
SRP018288_kidney | 0 .00 RPM | 59 .10 RPM |
SRP018288_liver | 0 .00 RPM | 59 .65 RPM |
SRP018288_lung | 0 .00 RPM | 5 .40 RPM |
SRP018856_adipose | 0 .18 RPM | 4 .14 RPM |
SRP035408_brain | 0 .00 RPM | 6 .96 RPM |
SRP035408_liver | 0 .00 RPM | 28 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000011979 | 1 retrocopy | |
Homo sapiens | ENSG00000172366 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013784 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008117 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007548 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000007995 | 1 retrocopy |
retro_sscr_433 ,
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