RetrogeneDB ID: | retro_nleu_1672 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397303.1:6127821..6128901(-) | ||
Located in intron of: | ENSNLEG00000002757 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GNL3L | ||
Ensembl ID: | ENSNLEG00000016233 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.61 % |
Parental protein coverage: | 62.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | ASESLLKSKACFGAENLMRVLGNYCRLGEVRTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGITKF |
A..........FGAENLMRVLGNYC.LGEVRTHI..G..GLPN.GKSSLI.SLKRS.ACSVGA.PG.TK. | |
Retrocopy | AFKARTQHRVSFGAENLMRVLGNYCCLGEVRTHIHMGIGGLPNNGKSSLIKSLKRSHACSVGAIPGVTKL |
Parental | MQEVYLDKFIRLLDAPGIVPGPNSEVGTILRNCVHVQKLADPVTPVETILQRCNLEEISNYYGISGFQTT |
MQE.YLDKFI.LLDAP.IVPGP.SEVGTIL.NC.H...LADP.T.VETILQ.CNLEEISNYY..SG..TT | |
Retrocopy | MQEIYLDKFIWLLDAPAIVPGPSSEVGTILHNCIHI*RLADPMTLVETILQCCNLEEISNYYLLSGYRTT |
Parental | EHFLTAVAHRLGKKKKGGLYSQEQAAKAVLADWVSGKISFYIPPPATHTLPTHLSAEIVKEMTEVFDIED |
EHFL.AVAH.LGKK....L.SQEQAAKAVLADWVSGKISFY.PPP.THTLP.HLSAEI.KEMT.VFDIED | |
Retrocopy | EHFLMAVAHHLGKKRD--LHSQEQAAKAVLADWVSGKISFYRPPPPTHTLPAHLSAEIIKEMTKVFDIED |
Parental | TEQANEDTMECLATGESDELLGDTDPLEMEIKLLHSPMTKIADAIENKTTVYKIGDLTGYCTNPNRHQMG |
TEQ.NEDTMECLATGESDELLGDTDPL.MEIKLLHSPM.KIADAIENK.T.YKIGDLTGYCTNPNRHQMG | |
Retrocopy | TEQVNEDTMECLATGESDELLGDTDPLKMEIKLLHSPMMKIADAIENKATMYKIGDLTGYCTNPNRHQMG |
Parental | WAKRNVDHHPKSNNMVDVCSVDRRPVLQRIMETDPLQQGQALASALKNKKKMQKRADKIASKLSDSMMSA |
WAK.NVDHHP.....VDVC.VD..PVLQRIME.DPLQQGQALAS.LKN.K..QKRADKI...LSDSMMSA | |
Retrocopy | WAKLNVDHHPXXXSKVDVCPVDCCPVLQRIMEMDPLQQGQALASSLKN-KNLQKRADKIPRELSDSMMSA |
Parental | LNLSGNADDGVGD |
L.LSGNAD..VGD | |
Retrocopy | LHLSGNADGSVGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000000252 | 2 retrocopies | |
Homo sapiens | ENSG00000130119 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007550 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010144 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008231 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016233 | 1 retrocopy |
retro_nleu_1672 ,
|
Oryzias latipes | ENSORLG00000014117 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020383 | 1 retrocopy |