RetrogeneDB ID: | retro_nleu_1688 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397304.1:3165561..3166523(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTA3 | ||
Ensembl ID: | ENSNLEG00000016680 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.01 % |
Parental protein coverage: | 53.96 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 5 |
Parental | LFLSRQYESLPATHIRGKCSVAL-LNETESVL-SYLDKEDTFFYSLV-YDPSLKTLLADKGEIRVGPRYQ |
L.LS.Q.ESLP.THIRGKCSVAL..N.TESVL..YL.K..TFFY.L...DPS.KTLLAD.GE.R.GPRYQ | |
Retrocopy | LSLSPQHESLPSTHIRGKCSVAL<MN*TESVL<AYLHKKYTFFYLLI<HDPSSKTLLADEGEFRMGPRYQ |
Parental | ADIPEMLLEGESDEREQSKLEVKVW-DPNSPLTDRQIDQFLVVARAVGTFARALDCSSSVRQPSLHMSAA |
.D.PEML.EGESDEREQ.K..VKVW.DPNSPL.D..I.QFL.VA...GT..R.LDCSSS.RQPSLHMSAA | |
Retrocopy | VDVPEMLIEGESDEREQ*KWKVKVW>DPNSPLKD*SINQFLIVASTIGTLPRPLDCSSSLRQPSLHMSAA |
Parental | AASRDITLFHAMDTLYRHSYDLSSAISVLVPLGGPVLCRDEMEEWSASEASLFEEALE-KYGKDFNDIRQ |
AAS.DIT.FHA.DT..RHSYDLSSAISV.VPL...VLCRD.MEEWSAS.ASLFEE.LE.KYGKDFNDI.Q | |
Retrocopy | AASQDITFFHAIDTMCRHSYDLSSAISVSVPLEEAVLCRDKMEEWSAS*ASLFEEVLE>KYGKDFNDICQ |
Parental | DFLPWKSLTSIIEYYYMWKTTDRYVQQKRLKAAEAESKLKQVYIPTY-KPNPNQISTSNGKPGAVNGAVG |
.F.PWKSL.SI.E.Y..W.TTDRYVQQK.LKAAE.ESKLKQVYIP.Y.KPNPNQISTSNGKPGAV.G... | |
Retrocopy | NFFPWKSLSSITECYFLWRTTDRYVQQKWLKAAENESKLKQVYIPIYSKPNPNQISTSNGKPGAVSGTMR |
Parental | TTFQPQNPLLGRACESCYATQSHQWYSWGPPNMQCRLCAICWLYWK |
.TF.PQNPLL..A.E.C.AT.S.Q.YSWG.PNMQC.L.A.....W. | |
Retrocopy | MTFLPQNPLLVQAWEGCCAT*SNQ*YSWGLPNMQCNLLALLRKIWR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014614 | 1 retrocopy | |
Homo sapiens | ENSG00000057935 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006895 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016680 | 1 retrocopy |
retro_nleu_1688 ,
|
Pan troglodytes | ENSPTRG00000011867 | 1 retrocopy |