RetrogeneDB ID: retro_nleu_2092

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397327.1:1656469..1656823(-)
• Located in intron of: ENSNLEG00000001197

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RGS17
• Ensembl ID: ENSNLEG00000015461
• Aliases: None
• Description: None

Sequence

>retro_nleu_2092
ATGTGAAAAAGGCAGCAGTCCCAAAGTGAAGGAACACCTGCTGCGTCTCAAGCGCCTGGAAACCAGAGGCCCAACAACAT
CTGTTGCTTTTGTTGGTGCTGTTGTTGCAGCTGCTCCTGCCTCACTGTTAGAAATGAAGAAAGAGGGGAAAATGCAGGAA
GAACCACACACAGTACAAAAATGGAGAATATCCAGGTCCTAGAGGAATGCCAAAACTCCACTGCAGAGGAAGTATTGCCC
TGGTCTCAAAATTTTGACAAGATGATAAAGGCGGCCCCAGCAGGAAGAAACCTTTTCAGAGAGTTCCTCTGAACAGAATA
CAACGAAGAGAACCTACTTTTCTGGCTTGCCTGT

Alignment

ORF - retro_nleu_2092 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.98 %
• Parental protein coverage: 55.71 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MRKRQQSQNEGTPAVSQAPGNQRPNNTCCFCWCCCCSCSCLTVRNEERGENAGRPTHTTKMESIQVLEEC
          M.KRQQSQ.EGTPA.SQAPGNQRPNN.CCFCWCCCCSCSCLTVRNEERGENAGR.TH.TKME.IQVLEEC
Retrocopy M*KRQQSQSEGTPAASQAPGNQRPNNICCFCWCCCCSCSCLTVRNEERGENAGRTTHSTKMENIQVLEEC

Parental  QNPTAEEVLSWSQNFDKMMK-APAGRNLFREFLRTEYSEENLLFWLAC
          QN.TAEEVL.WSQNFDKM.K.APAGRNLFREFL.TEY.EENLLFWLAC
Retrocopy QNSTAEEVLPWSQNFDKMIKAAPAGRNLFREFL*TEYNEENLLFWLAC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2092 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000091844	1 retrocopy	retro_hsap_1254,
Gorilla gorilla	ENSGGOG00000026033	1 retrocopy	retro_ggor_987,
Macaca mulatta	ENSMMUG00000019078	1 retrocopy	retro_mmul_1309,
Nomascus leucogenys	ENSNLEG00000015461	1 retrocopy	retro_nleu_2092 ,
Oryctolagus cuniculus	ENSOCUG00000021054	1 retrocopy	retro_ocun_1922,
Pan troglodytes	ENSPTRG00000029367	1 retrocopy	retro_ptro_3042,