RetrogeneDB ID: | retro_ocun_1922 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:37318048..37318372(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RGS17 | ||
Ensembl ID: | ENSOCUG00000021054 | ||
Aliases: | None | ||
Description: | regulator of G-protein signaling 17 [Source:HGNC Symbol;Acc:14088] |
Percent Identity: | 87.96 % |
Parental protein coverage: | 51.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MRKRQQSQNEGTPAVSQAPGNQRPNNTCCFCWCCCCSCSCLTVRNEERGENAGRPTHTTKMESIQVLEEC |
MRKRQQSQNEGTPA.SQAPGNQRP.NTCCFCWCC.CSCS.LT.RN.ERGEN.GRPT.T.KMESIQV.EEC | |
Retrocopy | MRKRQQSQNEGTPAMSQAPGNQRPKNTCCFCWCCYCSCSFLTIRNDERGENSGRPTYTIKMESIQVQEEC |
Parental | QNPAADEVLSWSQNFDKLMKAPAGRNLFREFLRTEYSE |
QNPAADEVLSWSQNFDKLMKAPAGRNL.REF..TEYSE | |
Retrocopy | QNPAADEVLSWSQNFDKLMKAPAGRNLSREFFHTEYSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .34 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .51 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000091844 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026033 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019078 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015461 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000021054 | 1 retrocopy |
retro_ocun_1922 ,
|
Pan troglodytes | ENSPTRG00000029367 | 1 retrocopy |