>retro_nleu_2480
CCCTATTTTAATCTTGTGAAGCATTTAACACCTGCCTGTCCAAATGTATATAGTATATCACAGTTTCATCACACAACCCC
GTACAGCAAAACACACACTGGTGAGAAATACACCGATCCTTTCAAACTCGGTTGGAGAGACTTGAAAGGTCTGTATGAGG
ACATTAGAAAGGTACTGCTCATATCGACAACAGAACTTAAGGAAATGTCTGAGTACTACTTTGATGTAAAAGGAAAAGCC
TTTTGACCAATTATTGTGGTACTAATGGCCCAAGCACGTAATATTCATCATAATAACTCCCGACATGTGCAAGCTAGCCA
GCGCGCCACAGCCTTAATTGCAGGAATGATCCACACTGCTAGTCTTGTTCACGATGACGTTACTGATGATGCAAGTTCTC
GAAAAGGAAAACACAAGATCTGGGGTGAAAAGAAGGCTGTCCTTGCTGGAGATTTAATTCTTTCTGTAGTATCTATAGCT
GGGGCACAAATTGGAAATGCAACTGATATATCTATTTTAACCCAAGTTATTGAAGATTTGGTGTGTGGTGAATTTCTTCA
GCTCGGATCAAAAGAAAATGAGAATGAAAGATTTGCACAATACCTTGAAAAGACCTTCAAGAACACTGCGAGCCTGATAG
CCAGCAGTGGTAAAGCAGTCTCTGTTCTAGGATGCCCCGACCCAGTGGTGCATGAGATCGGCTATCAGTACGGAAAAAAT
GTAGGAATAGCTTTTCAGCTAATAGATGATGTATTGGACTTCACCTCATGTTCTAACATAGGCAAACCAACATCAGCTGA
TGTGAATCTCGGGTTAGCCACTGGTCCTGTCCTGTCTGCCTGTCAGCAGTTCCCAGAAATGAATGCTATGATCATGAGAT
GGTTCAGTTTGCCGGGAGATGTAGACAGAGCTCCACAGTATGTATTACAGACTGATGGTGTGCAACAAACAACCTACCTC
GCCCAGCAGTACTGCTGTGAAGCAGTAAGAGAGATCAGTAAACTTCCACCATCCCCAGAAAGAGACGCCCTCATTCAACT
TTCAGAAATCGTACTCACAAGACATAAA
ORF - retro_nleu_2480 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.94 % |
Parental protein coverage: |
95.74 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | PYINVVKHLTSACPNVYSISRFHHTTPDSKTHSGEKYTDPFKLGWRDLKGLYEDIRKELLISTSELKEMS |
| PY.N.VKHLT.ACPNVYSIS.FHHTTP.SKTH.GEKYTDPFKLGWRDLKGLYEDIRK.LLIST.ELKEMS |
Retrocopy | PYFNLVKHLTPACPNVYSISQFHHTTPYSKTHTGEKYTDPFKLGWRDLKGLYEDIRKVLLISTTELKEMS |
|
Parental | EYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRTIALIAEMIHTASLVHDDVIDDASSRRGKHTV |
| EYYFD.KGKAF.PIIV.LMA.A.NIHHNNSRHVQASQR..ALIA.MIHTASLVHDDV.DDASSR.GKH.. |
Retrocopy | EYYFDVKGKAF*PIIVVLMAQARNIHHNNSRHVQASQRATALIAGMIHTASLVHDDVTDDASSRKGKH-- |
|
Parental | NKIWGEKKAVLAGDLILSAASIALARIGNTTVISILTQVIEDLVRGEFLQLGSKENESERFAHYLEKTFK |
| .KIWGEKKAVLAGDLILS..SIA.A.IGN.T.ISILTQVIEDLV.GEFLQLGSKENE.ERFA.YLEKTFK |
Retrocopy | -KIWGEKKAVLAGDLILSVVSIAGAQIGNATDISILTQVIEDLVCGEFLQLGSKENENERFAQYLEKTFK |
|
Parental | KTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGP |
| .TASLIA.S.KAVSVLGCPDPVVHEI.YQYGKNVGIAFQLIDDVLDFTSCS...GKPTSAD..LGLATGP |
Retrocopy | NTASLIASSGKAVSVLGCPDPVVHEIGYQYGKNVGIAFQLIDDVLDFTSCSN-IGKPTSADVNLGLATGP |
|
Parental | VLFACQQFPEMNAMIMRRFSLPGDVDRARQYVLQSDGVQQTTYLAQQYCHEAIREISKLRPSPERDALIQ |
| VL.ACQQFPEMNAMIMR.FSLPGDVDRA.QYVLQ.DGVQQTTYLAQQYC.EA.REISKL.PSPERDALIQ |
Retrocopy | VLSACQQFPEMNAMIMRWFSLPGDVDRAPQYVLQTDGVQQTTYLAQQYCCEAVREISKLPPSPERDALIQ |
|
Parental | LSEIVLTRDK |
| LSEIVLTR.K |
Retrocopy | LSEIVLTRHK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2480 was not experimentally validated.
Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.