RetrogeneDB ID: | retro_nleu_2725 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397410.1:1654247..1654869(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZDHHC3 | ||
Ensembl ID: | ENSNLEG00000006024 | ||
Aliases: | None | ||
Description: | zinc finger, DHHC-type containing 3 [Source:HGNC Symbol;Acc:18470] |
Percent Identity: | 68.08 % |
Parental protein coverage: | 70.57 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MMLIPTHHFRDIERKPEYLQPEKCVPPPYPGPVGTMWFIRDGCGIACAIVTWFLVLYAEFVVLFVMLIPS |
M.L.P.H.FRD.ERKPEY...E..V..PYPGPV.TMW.I.DGCGIA.AI.TWFL.LY.E.VVLF..LIPS | |
Retrocopy | MVLVPAHRFRDSERKPEYP*LEMPVQSPYPGPVRTMWLIHDGCGIAFAIITWFLILYVESVVLFFTLIPS |
Parental | RDYVYSIINGIVFNLLAFLALASHCRAMLTDPGAVPKGNATKEFIESLQLKPGQVVYKCP-KCCSIKPDR |
.DY.Y..INGIV.NLL.FLAL.SHC.AMLTD.GAVPK.NATK.FI.SL..KP..VVY.CP..CCSIK.DR | |
Retrocopy | *DYAYCTINGIVLNLLTFLALDSHCQAMLTDTGAVPK*NATK*FIQSLHMKPRYVVYSCP<QCCSIKSDR |
Parental | AHHCSVCKRCIRKMDHHCPWVNNCVGENNQKYFVLFTMYIALISLHALIMV-GFHFLHCFEEDWTKCSSF |
A..CSVCK.CIR..D.HCPWV..C..ENNQK.FVLF.M..ALISL.ALI.V.GFHFL.C.EED...CS.. | |
Retrocopy | ACRCSVCKGCIRRVDPHCPWVDICIEENNQKCFVLFIMCTALISLPALIVV<GFHFLDCCEED---CSNL |
Parental | SPP |
..P | |
Retrocopy | PKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Gorilla gorilla | ENSGGOG00000013490 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012733 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006024 | 1 retrocopy |
retro_nleu_2725 ,
|
Rattus norvegicus | ENSRNOG00000004344 | 1 retrocopy |