>retro_rnor_1688
CCCAAGTGCTGCAGCATCAAGCCCGACCGGGCACACCACTGCAGTGTTTGTAAGCGGTGCATTTGCAAGATGGACCACCA
CTGTCCGTGGGTCAACAACTGTGTCGGCGAGAACAACCAGAAGTACTTTGTCCTGTTCACAATGTACATAGCTCTCATTT
CCTTGCACGCCCTCATCATGGTGGGATTCCACTTCCTGCATTGCTTTGAAGAAGACTGGACAAAGTGCAGCTCCTTCTCA
CCGCCCACCACTGTCATCCTGCTCATCCTGCTGTGTTTTGAGGCCGCTCTTCCTCATTTTCACATCAGTGATGTTTGGGA
CCCAAGTGCACTCCATCTGCACAGATGAGACAGGAATAGAACAATTGAAAAAGGAAGAGAGAAGATGGGCTAAAAAAACA
AAGTGGGTGAACTTGAAAGCCGTTTTTGGCCACTCTTTCTCTTTAGGCTGGGCCAGCCCCTTTGCCACACCA
ORF - retro_rnor_1688 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
92.45 % |
Parental protein coverage: |
52.84 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | PKCCSIKPDRAHHCSVCKRCIRKMDHHCPWVNNCVGENNQKYFVLFTMYIALISLHALIMVGFHFLHCFE |
| PKCCSIKPDRAHHCSVCKRCI.KMDHHCPWVNNCVGENNQKYFVLFTMYIALISLHALIMVGFHFLHCFE |
Retrocopy | PKCCSIKPDRAHHCSVCKRCICKMDHHCPWVNNCVGENNQKYFVLFTMYIALISLHALIMVGFHFLHCFE |
|
Parental | EDWTKCSSFSPPTTVILLILL-CFEALLFLIFTSVMFGTQVHSICTDETGIEQLKKEERRWAKKTKWMNM |
| EDWTKCSSFSPPTTVIL...L.C....LFLIFTSVMFGTQVHSICTDETGIEQLKKEERRWAKKTKW.N. |
Retrocopy | EDWTKCSSFSPPTTVIL-LIL>CVLRPLFLIFTSVMFGTQVHSICTDETGIEQLKKEERRWAKKTKWVNL |
|
Parental | KAVFGHPFSLGWASPFATP |
| KAVFGH.FSLGWASPFATP |
Retrocopy | KAVFGHSFSLGWASPFATP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .07 RPM |
31 .20 RPM |
SRP017611_kidney |
0 .14 RPM |
48 .15 RPM |
SRP017611_liver |
0 .07 RPM |
14 .93 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_1688 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_1688 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_1688 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.