RetrogeneDB ID:

retro_nleu_3033

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397604.1:74889..75243(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000214788
Ensembl ID:ENSNLEG00000013194
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_3033
ATGAAGACCTTTCTGGGGTTAAAAGGATTCTTTCTTCTCTGTTCCTTGATATGGGCCTGTGCTGGGGACTGGTCAGCTGT
TCAAATGCAACACACTCAGTTTTGGTTCTGTGCCAGGATTAAACCTACAATATTTCACATTTCATATATAAACCCCGATG
AAGTGTTTCTAGGAGATGGCTGCCCCATAACCTATGTTTTGCCAAATGTTTACTACGAGTTTCATTATCATCCTCTTGAA
TATGGTATTGGAACTAAAAATCTTCAGGAAATTCTGCTTTAAACTAAAACCAAGTATATCTCAAAAAACTTTCCTCTCTG
ATCTGAAATGCCTCTGTCATGTGTTGTCTGCAAT

ORF - retro_nleu_3033 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.07 %
Parental protein coverage: 96.75 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMKTILGFKGLFYLHSLIWTCAGDWSAIQVHCTQFWFFARIKPTIFYNLYMNPDEVFLGDGCRVTHVLPNV
MKT.LG.KG.F.L.SLIW.CAGDWSA.Q...TQFWF.ARIKPTIF...Y.NPDEVFLGDGC..T.VLPNV
RetrocopyMKTFLGLKGFFLLCSLIWACAGDWSAVQMQHTQFWFCARIKPTIFHISYINPDEVFLGDGCPITYVLPNV
ParentalYYEFFYHPHDCGIVTQPLRGVLLLKTKIKYISRDSTVRSEMPLSCVVHN
YYEF.YHP...GI.T..L....LL.TK.KYIS......SEMPLSCVV.N
RetrocopyYYEFHYHPLEYGIGTKNLQEI-LL*TKTKYISKNFPL*SEMPLSCVVCN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_3033 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 50 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000273481 retrocopy
Homo sapiens ENSG000002147882 retrocopies
Gorilla gorilla ENSGGOG000000167926 retrocopies
Nomascus leucogenys ENSNLEG00000013194 3 retrocopies
retro_nleu_2825, retro_nleu_2997, retro_nleu_3033 ,
Pongo abelii ENSPPYG0000000322320 retrocopies
Pan troglodytes ENSPTRG0000003450618 retrocopies



Copyright © RetrogeneDB 2014-2017