RetrogeneDB ID: | retro_oana_13 | ||
Retrocopylocation | Organism: | Platypus (Ornithorhynchus anatinus) | |
Coordinates: | 3:26524605..26525003(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EXOSC3 | ||
Ensembl ID: | ENSOANG00000000886 | ||
Aliases: | None | ||
Description: | exosome component 3 [Source:HGNC Symbol;Acc:17944] |
Percent Identity: | 77.04 % |
Parental protein coverage: | 52.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | YLAFEGATKRNRPDVQVGDLIYGQFIVANKDMEPEIACISSGGKGNGMGVIGQDGLLIKAT-LGLIRKL- |
Y.AF...TKRNRP.V..GDLIYGQFIVANKDME.EIACISSGG.GNGMG.IGQDGLL..AT...LIRKL. | |
Retrocopy | YVAFQSTTKRNRPEVLAGDLIYGQFIVANKDMESEIACISSGGRGNGMGIIGQDGLLLEATKVALIRKL< |
Parental | LSPSCEIIQEMSKLFPMEIVIGMNGRIWVKAKTIQQTLILANILEACEFMTTDQRKRILARLADR |
L.P.C.IIQEMSKL.P.EI..GMN.R.W.KA.TIQ.TLILANILEACEFMTT.QRK.IL.RLADR | |
Retrocopy | LAPGC*IIQEMSKLYPVEIT-GMNRRTWGKARTIQHTLILANILEACEFMTTNQRKQILSRLADR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 13 .69 RPM |
SRP007412_cerebellum | 0 .05 RPM | 13 .95 RPM |
SRP007412_heart | 0 .00 RPM | 13 .28 RPM |
SRP007412_kidney | 0 .00 RPM | 16 .58 RPM |
SRP007412_liver | 0 .00 RPM | 30 .56 RPM |
SRP007412_testis | 0 .00 RPM | 29 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000107371 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006970 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003529 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000000886 | 1 retrocopy |
retro_oana_13 ,
|
Pongo abelii | ENSPPYG00000019055 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000020952 | 1 retrocopy |