RetrogeneDB ID: | retro_ocun_106 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:142702181..142702703(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000020937 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBMX2 | ||
Ensembl ID: | ENSOCUG00000011809 | ||
Aliases: | None | ||
Description: | RNA binding motif protein, X-linked 2 [Source:HGNC Symbol;Acc:24282] |
Percent Identity: | 66.86 % |
Parental protein coverage: | 51.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDVICVFSQNRYGEVVNINLVR |
.PLTKVKL..EL.ERE....V..KVSWHS.Y.DSAW.F.GGLPYELTEGD..CVFSQ..YGE.VNI.LVR | |
Retrocopy | NPLTKVKLVRELSEREAGM-VPPKVSWHSMYRDSAWVFVGGLPYELTEGDILCVFSQ--YGEIVNIHLVR |
Parental | DKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVANYRVPKVSEDMDDVTRELQAMGCGVN |
DKKTGKS.GF.F.CYEDQRST.LAVDNFNGIKIKGRTIRVDH..NYR.P..SED.DDVTREL...GCG.. | |
Retrocopy | DKKTGKSRGFGFICYEDQRSTVLAVDNFNGIKIKGRTIRVDHASNYRPPRDSEDIDDVTRELREKGCGPQ |
Parental | TPSPSSSEDSEEEKPIKKHKKDKMEKKKRRKE |
.PS.SSS..S..E......K..K......R.. | |
Retrocopy | VPSASSSGGSRNEALPPQPKLEKGMGEDQRED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .73 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .18 RPM |
SRP017611_liver | 0 .00 RPM | 3 .24 RPM |
Species | RetrogeneDB ID |
---|---|
Equus caballus | retro_ecab_664 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Myotis lucifugus | ENSMLUG00000017095 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011809 | 1 retrocopy |
retro_ocun_106 ,
|
Pteropus vampyrus | ENSPVAG00000004425 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000016412 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016210 | 1 retrocopy |