RetrogeneDB ID: | retro_pvam_1404 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_8009:6170..6824(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBMX2 | ||
Ensembl ID: | ENSPVAG00000004425 | ||
Aliases: | None | ||
Description: | RNA binding motif protein, X-linked 2 [Source:HGNC Symbol;Acc:24282] |
Percent Identity: | 60.09 % |
Parental protein coverage: | 64.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LAGMNPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINL |
L..MNPLTKVKL..ELNERE....VA...SWHSEYKDSAWIF.GGLP.ELTEGDI.CVFSQYGEIVNINL | |
Retrocopy | LTKMNPLTKVKLVSELNEREAHIAVAATASWHSEYKDSAWIFVGGLPFELTEGDILCVFSQYGEIVNINL |
Parental | VRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEMDDVTRELQDEGCG |
VRD.KTGKSKGFCF.CYEDQRST.LAVDNFNGIKIKGRTIRVDHVS.YR.P...E..DD.TR.L...GCG | |
Retrocopy | VRDQKTGKSKGFCFICYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSCYRPPRVLEGVDDATRKLWQKGCG |
Parental | AHTTLPNSSEGSEDDKPTKKHKKDKKERKKRKKDKEKTDREVQAEQPASFSFPRSKMIKEKDDSGSKKHS |
..T....SSEGSED......HK..K..R.K.K.........................IK..D..GS.... | |
Retrocopy | IQTSSSSSSEGSEDEALSEHHKQEKQKRSKTKERTTILVKDEERQTQQPLFLAARGQIKMEDTLGSDERA |
Parental | SKNSERHQ |
....E... | |
Retrocopy | KVKFESRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Myotis lucifugus | ENSMLUG00000017095 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011809 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000004425 | 1 retrocopy |
retro_pvam_1404 ,
|
Sarcophilus harrisii | ENSSHAG00000016412 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016210 | 1 retrocopy |