RetrogeneDB ID: | retro_ocun_1160 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:26100541..26100817(+) | ||
Located in intron of: | ENSOCUG00000028126 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000025718 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPP14 | ||
Ensembl ID: | ENSOCUG00000027202 | ||
Aliases: | None | ||
Description: | ribonuclease P/MRP 14kDa subunit [Source:HGNC Symbol;Acc:30327] |
Percent Identity: | 69.15 % |
Parental protein coverage: | 74.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QRIMRIDPSDYHYMKVRL-EFEEHGIGLNAAQFKQLLVSALQELFGEVG-AALPFDVLTYEEKTLSAILR |
QR.....PS.YHYMK..L..F.E.G.GLN.AQ.KQLLVSAL.EL.GE...AA.P.DVLTYEEKT.SAILR | |
Retrocopy | QRVVYKNPSEYHYMKDCL<DFQECGVGLNGAQLKQLLVSALKELSGEAD>AASPIDVLTYEEKTSSAILR |
Parental | VCNSGFVKLWSSLTMLGSYKGNKC |
.C.S..VKLWSSLT.LGSYKG.KC | |
Retrocopy | ICSSSLVKLWSSLTLLGSYKGEKC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 10 .43 RPM |
SRP017611_kidney | 0 .20 RPM | 17 .13 RPM |
SRP017611_liver | 0 .31 RPM | 9 .25 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019987 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000004281 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013439 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010883 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000014541 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007998 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000022513 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000027202 | 3 retrocopies |
retro_ocun_1160 , retro_ocun_1359, retro_ocun_1425,
|
Rattus norvegicus | ENSRNOG00000039829 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000015394 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013343 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000000935 | 1 retrocopy |