RetrogeneDB ID: | retro_ocun_1184 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:19170979..19171635(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000021117 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000013434 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.91 % |
Parental protein coverage: | 99.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAEYLASIFGTEK-DKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHV |
MAE.LASIFGTE..DKVN.SFYF.IGACRHGD.CSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHV | |
Retrocopy | MAE*LASIFGTER<DKVNRSFYFNIGACRHGDQCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHV |
Parental | SDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQA |
SDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAEL.NRWFNGQA | |
Retrocopy | SDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELHNRWFNGQA |
Parental | VHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNL-RQLYGRGPRRRSPPRSHAGHRPRERNR |
VHAELSPVTDFRESCCRQYEMGECTRGGFCNF.HLRPISRNL.RQLYGRGPRRRSPPRSHAGHRPRERNR | |
Retrocopy | VHAELSPVTDFRESCCRQYEMGECTRGGFCNFRHLRPISRNLRRQLYGRGPRRRSPPRSHAGHRPRERNR |
Parental | RHSPDHRHGR |
RHSPDHRHGR | |
Retrocopy | RHSPDHRHGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .15 RPM | 38 .47 RPM |
SRP017611_kidney | 2 .23 RPM | 21 .39 RPM |
SRP017611_liver | 0 .46 RPM | 6 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000006383 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016828 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012923 | 1 retrocopy | |
Mus musculus | ENSMUSG00000078765 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013434 | 1 retrocopy |
retro_ocun_1184 ,
|
Sus scrofa | ENSSSCG00000002896 | 1 retrocopy |