Parental gene:

U2AF1, ENSSSCG00000002896

Aliases:None
Description:Splicing factor U2AF 35 kDa subunit [Source:UniProtKB/Swiss-Prot;Acc:Q29350]
Organism:Pig (Sus scrofa)
Coordinates:6:40625561..40627757(-)


>ENSSSCG00000002896
ATGGCTGAATATTTAGCTTCGATATTCGGGACTGAGAAGGACAAGGTTAACTGCTCTTTTTACTTTAAGATCGGGGCCTG
CCGGCACGGGGACCGGTGCTCCCGGCTTCACAACAAACCGACTTTCAGCCAGACCATAGTGCTGCTCAACCTGTACCGGA
ATCCACAGAACACTGCCCAAACCGCAGACGGATCGCACTGTCACGTGAGCGATGTGGAGGTGCAAGAACACTATGATAAC
TTCTTCGAGGAAGTGTTCACGGAACTGCAGGAGAAGTACGGGGAGATTGAAGAGATGAATGTGTGCGACAACTTGGGGGA
TCACCTCGTGGGCAATGTTTATGTCAAGTTTCGGCGGGAGGAGGATGCAGAGCGGGCAGTGGCTGAACTCAATAACCGCT
GGTTCAATGGGCAGGCTGTGCATGCCGAGCTGTCTCCAGTCACTGACTTCCGGGAATCATGCTGTCGACAGTATGAGATG
GGGGAATGCACCCGCGGTGGTTTCTGCAACTTCATGCACCTGCGACCCATCTCCCGCAACCTTCGACGGCAGCTCTATGG
GCGGGGACCCAGGCGCAGGTACCTTAAGACTGACCAGCCTGCCAAGACTTCTCAGTCACCCCCAAGGTCCCATGCTGGCC
ACCGTCCTCGAGAAAGAAATCGGCGACGGTCCCCAGACCACCGGCATGGCCGTTTCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 10 .75 RPM
SRP014902_testis 14 .71 RPM
SRP018288_heart 13 .75 RPM
SRP018288_kidney 11 .62 RPM
SRP018288_liver 5 .44 RPM
SRP018288_lung 26 .17 RPM
SRP018856_adipose 28 .90 RPM
SRP035408_brain 22 .23 RPM
SRP035408_liver 7 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Felis catus ENSFCAG00000006383 ortholog_one2one 1 retrogene
retro_fcat_1650,
Gorilla gorilla ENSGGOG00000016828 ortholog_one2one 1 retrogene
retro_ggor_150,
Loxodonta africana ENSLAFG00000012923 ortholog_one2one 1 retrogene
retro_lafr_1090,
Mus musculus ENSMUSG00000078765 ortholog_one2one 1 retrogene
retro_mmus_540,
Oryctolagus cuniculus ENSOCUG00000013434 ortholog_one2one 1 retrogene
retro_ocun_1184,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_543 67.25 72.84
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Download FASTA sequences of all ENSSSCG00000002896 retrocopies