>retro_ocun_1258
TTTATAATTTATCGGGAACCGAATGTTTCTCCGGCACAAGTAACTGAAAATAATTTTCCTGAAAAGGTATTACTGTGTTT
TTCAAATGGAAATCACCATGATATTGTTTACCCCATAAAGTATAAAGATAGTTCTGCTATGTGTCAGTCTCTTCTTTATG
AATTGCTCTATGAGAAGGTGTTGAAAGCTGATGTCAGTAAAATCGTGATGGGACTAGACACTTCTGAAGTAGCTGATGGA
AACAACAGTGAAATATCAGATTCAGAGGATGATAGTTGCAAGAGGAAAACTGCTAATGATGTGAATGGATTTAAACCTTT
GTCAGGCGATGAGCACTTGAAGAACAATGGGAATTCTACTAGCCTTCCCTTGTCTAGAAAGGTTCTTAAGTCACTCAATC
CAGCAGTCTACAGAACTGTGGAATATGAAATTTGGCTGAAGTCTAAACAAACTCAACAAAAGCGTGATTATTCCATTGCT
GCTGGTTTACAATATGAAGTTGGAGAGAAATGCCAAGTTAGGTTGGATCACAATGGAAAATTTCCTAATGCAGATATTCA
AGGAGTTCACTCTGAGAATGGACCAGTTTTGGTTGAAGAATTGGGAAAAAAACATGCCGTGAAGACCCTCAAACCACCTC
CCCCAGAAAGCTGGAGCACAGTGTCAGGAAAGAAGATGAAAAAACCTTCTACTTCGGGACAAAATTTTCATTCTGAAATG
GATTACAGAGGGCCAAAGAATCCAAGCAAGCCAATAAAAGCCCCATCAGTACTACCTCCTCAGCTCCAGCATCCTTTGGG
AATAAGACAACATGCATTCTCTAGTCACTCTTCAGGGGCACAGTCTCAGAAATCCTCCAGTGAACACAAAAATCTTGCCA
GGACACCTTCACAGATCATGAGAAAACCTGATCGTGAGAGAGCTGAGGATTTTGATCACACGAATAGAGAATCTCACTAT
TTTGGCCTCTCCCCTGAAGAACGCAGAGAGAAGCAAGCCATAGAAGAATCTCTTATACTTTAAGAGATTCAGAACAGAGA
TGAACAGGCTTTCCCAACCCTTTCCATGTCATCAGTCAGTACATCAGCTTCTCAAAGTAGCAACCATGTGTCCAGAGAAA
ATCATCCCACGGAAGTGATAGAAAAGGAAACAGGCGGAGAATGGACACAAGAACGGAAGGACAAAGACTCTGTCCATGGA
TCTACTCACTTGGATAAAAAACCTGAACCAAGTACATTAGAGAATATTAGTGATGATAGATGTGCAAGAGTTTCATCACC
ATTGAAGTCAAAGAAATTAGAGTGCCCATCTCCTGCAGAACAAAAGCCAGCAGAACATGGGTCTCTGTCAAATCGACCAA
CAGGTGTCCCTGCTTCAATTCCTCTTTTATCGGTGACACAGACTCTGACCACTGGACCTGATTCTGCTGTATCCCAACCT
ACAACTTTTGGACCAACAGTTCCTGTGTCAATACAGGCAGTTAACCAGCCCTTGATGCCTTTGCCTCAGACA
ORF - retro_ocun_1258 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.91 % |
Parental protein coverage: |
78.94 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | FIIYREPNVSPAQVTENNFPEKVLLCFSNGNHYDIVYPIKYKDTSAMCQSLLYELLYEKVFKADVSKIVM |
| FIIYREPNVSPAQVTENNFPEKVLLCFSNGNH.DIVYPIKYKD.SAMCQSLLYELLYEKV.KADVSKIVM |
Retrocopy | FIIYREPNVSPAQVTENNFPEKVLLCFSNGNHHDIVYPIKYKDSSAMCQSLLYELLYEKVLKADVSKIVM |
|
Parental | GLDTSEVADGNNSEISDSEDDSCKRKTANDVNGFKPLSGDEHLKNNGNSTSLPLSRKVLKSLNPAVYRNV |
| GLDTSEVADGNNSEISDSEDDSCKRKTANDVNGFKPLSGDEHLKNNGNSTSLPLSRKVLKSLNPAVYR.V |
Retrocopy | GLDTSEVADGNNSEISDSEDDSCKRKTANDVNGFKPLSGDEHLKNNGNSTSLPLSRKVLKSLNPAVYRTV |
|
Parental | EYEIWLKSKQAQQKRDYSIAAGLQYEVGEKCQVRLDHNGKFPNADIQGVHSENGPVLVEELGKKHAVKTL |
| EYEIWLKSKQ.QQKRDYSIAAGLQYEVGEKCQVRLDHNGKFPNADIQGVHSENGPVLVEELGKKHAVKTL |
Retrocopy | EYEIWLKSKQTQQKRDYSIAAGLQYEVGEKCQVRLDHNGKFPNADIQGVHSENGPVLVEELGKKHAVKTL |
|
Parental | KPPPPESWSTVSGKKMKKPSTSGQNFHSEMDYRGPKNPSKPIKAPSVLPPRLQHPLGIRQHAF---SSGA |
| KPPPPESWSTVSGKKMKKPSTSGQNFHSEMDYRGPKNPSKPIKAPSVLPP.LQHPLGIRQHAF...SSGA |
Retrocopy | KPPPPESWSTVSGKKMKKPSTSGQNFHSEMDYRGPKNPSKPIKAPSVLPPQLQHPLGIRQHAFSSHSSGA |
|
Parental | QSQKSSSEHKNLARTPSQIMRKPDRERAEDFDHTNRESHYFGLSPEERREKQAIEESRLLYEIQNRDEQA |
| QSQKSSSEHKNLARTPSQIMRKPDRERAEDFDHTNRESHYFGLSPEERREKQAIEES..L.EIQNRDEQA |
Retrocopy | QSQKSSSEHKNLARTPSQIMRKPDRERAEDFDHTNRESHYFGLSPEERREKQAIEESLIL*EIQNRDEQA |
|
Parental | FPALSMSSVSTSASQSSN-PCVQRKSSHGSDRKGNRRRMD-TEERKDKDSVHGSTHLDKKPEPSTLENIS |
| FP.LSMSSVSTSASQSSN.PCV....S.........RR...T.ERKDKDSVHGSTHLDKKPEPSTLENIS |
Retrocopy | FPTLSMSSVSTSASQSSN<PCV-QRKSSHGSDRKGNRRRM>TQERKDKDSVHGSTHLDKKPEPSTLENIS |
|
Parental | DDRCARVSSPLKSKKLECPSPAEQKPAEHVSLSNPAPLLVSPEVHLTPAVPSLPATVPAWPSEPTTFGPT |
| DDRCARVSSPLKSKKLECPSPAEQKPAEH.SLSN..P..V.....L......L........S.PTTFGPT |
Retrocopy | DDRCARVSSPLKSKKLECPSPAEQKPAEHGSLSN-RPTGVPASIPLLSVTQTLTTGPDSAVSQPTTFGPT |
|
Parental | GVPAPIPVLSVTQTLTTGPDS |
| ....P.....V.Q.L...P.. |
Retrocopy | ---VPVSIQAVNQPLMPLPQT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
6 .84 RPM |
SRP017611_kidney |
0 .00 RPM |
7 .70 RPM |
SRP017611_liver |
0 .00 RPM |
6 .47 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1258 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1258 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1258 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.