>retro_ocun_330
ATGGCCTGTATTCACTATCTTCGAGAAAACAGAGAGAAATTTGAAGCGTTCATAGAAGGATCATTTGAAGAGTATTTAAA
GCGTTTGCAAAATCCACAGGAGTGGGTAGGACAAGTGGAAATAAGTGCCCTTTCTCTTATGTACAGGAAAGATTTTATAA
TTTATCGGGAACCGAATGTTTCTCCGGCACAAGTAACTGAAAATAATTTTCCTGAAAAGGTATTACTATGTTTTTCAAAT
GGAAATCACTATGATATTGTTTACCCCATAAAGTATAAAGATAGTTCTGCTATGTGTCAGTCTCTTCTTTATGAATTGCT
CTATGAGAAGGTATTTAAAGCTGATGTCAGTAAAATCGTGATGGGACTAGACACTTCTGAAGTAGCTGATGGAAACAACA
GTGAAATATCAGATTCAGAGGATGATAGTTGCAAGAGGAAAACTGCTAATGATGTGAATGGATTTAAACCTTTGTCAGGC
GATGAGCACTTGAAGAACAATGGGAATTCTACTAGCTTTCCCTTGTCTAGAAAGGTTCTTAAGTCACTCAATCCAGCAGT
CTACAGAAATGTGGAATATGAAATTTGGCTGAAGTCTAAACAAGCTCAACAAAAGCGTGATTATTCCATTGCTGCTGGTT
TACAATATGAAGTTGGAGAGAAATGCCAAGTTAGGTTGGATCACAATGGAAAATTTCCTAATGCAGATATTCAAGGAGTT
CACTCTGAGAATGGACCAGTTTTGGTTGAAGAATTGGGAAAAAAACATGCCGTGAAGACCCTCAAACCACCTCCCCCAGA
AAGCTGGAGCACAGTGTCAGGAAAGAAGATGAAAAAACCTTCTACTTCGGGACAAAATTTTCATTCTGAAATGGATTACA
GAGGGCCAAAGAATCCAAGCAAGCCAATAAAAGCCCCATCAGTACTACCTCCTCAGCTCCAGCATCCTTTGGGAATAAGA
CAACATGCATTCTCTAGTCACTCTTCAGGGGCACAGTCTCAGAAATCCTCCAGTGAACACAAAAATCTTGCCCGGACACC
TTCACAGATCATGAGAAAACTGGTCGTGAGAGAGCTGAGGATTTTGATCACACAAATAGAGAATCTCACTATTTTGGCCT
CTCCCCTGAAGAACGCAGAGAGAAGCAAGCCATAGAAGAATCTCTTATACTTTAAGAGATTCAGAACAGAGATGAACAGG
CTTTCCCAACCCTTTCCATGTCATCAGTCAGTACATCAGCTTCTCAAAGTAGCAACCATGTGTCCAGAGAGAATCATCCC
ACGGAAGTGATAGAAAAGGAAACAGGCGGAGAATGGACACAAGAACGGAAGGACAAAGACTCTGTCCATGGATCTACTCA
CTTGGATAAAAAACCTGAACCAAGTACATTAGAGAATATTAGTGATGATAGATGTGCAAGAGTTTCATCCCCATTGAAGT
CAAAGAAATTAGAGTGCCCATCTCCTGCAGAACAAAAGCCAGCAGAACATGTGTCTCTGTCAAATCCAGCTCCCCTTCTA
GTGTCTCCAGAGGTCCATCTAACTCCTGCGGTGCCTTCTTTACCAGCCACTGTGCCAGCCTGGCCAAGTGAACCTACAAC
TTTTGGACCAACAGTTCCTGTGTCAATACAGGCAGTTAACCAGCCCTTGATGCCTTTGCCTCAGACA
ORF - retro_ocun_330 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
91.47 % |
Parental protein coverage: |
86.9 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MACIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPAQVTENNF |
| MACIHYLRENREKFEAFIEGSFEEYLKRL.NPQEWVGQVEISALSLMYRKDFIIYREPNVSPAQVTENNF |
Retrocopy | MACIHYLRENREKFEAFIEGSFEEYLKRLQNPQEWVGQVEISALSLMYRKDFIIYREPNVSPAQVTENNF |
|
Parental | PEKVLLCFSNGNHYDIVYPIKYKDTSAMCQSLLYELLYEKVFKADVSKIVMGLDTSEVADGNNSEISDSE |
| PEKVLLCFSNGNHYDIVYPIKYKD.SAMCQSLLYELLYEKVFKADVSKIVMGLDTSEVADGNNSEISDSE |
Retrocopy | PEKVLLCFSNGNHYDIVYPIKYKDSSAMCQSLLYELLYEKVFKADVSKIVMGLDTSEVADGNNSEISDSE |
|
Parental | DDSCKRKTANDVNGFKPLSGDEHLKNNGNSTSLPLSRKVLKSLNPAVYRNVEYEIWLKSKQAQQKRDYSI |
| DDSCKRKTANDVNGFKPLSGDEHLKNNGNSTS.PLSRKVLKSLNPAVYRNVEYEIWLKSKQAQQKRDYSI |
Retrocopy | DDSCKRKTANDVNGFKPLSGDEHLKNNGNSTSFPLSRKVLKSLNPAVYRNVEYEIWLKSKQAQQKRDYSI |
|
Parental | AAGLQYEVGEKCQVRLDHNGKFPNADIQGVHSENGPVLVEELGKKHAVKTLKPPPPESWSTVSGKKMKKP |
| AAGLQYEVGEKCQVRLDHNGKFPNADIQGVHSENGPVLVEELGKKHAVKTLKPPPPESWSTVSGKKMKKP |
Retrocopy | AAGLQYEVGEKCQVRLDHNGKFPNADIQGVHSENGPVLVEELGKKHAVKTLKPPPPESWSTVSGKKMKKP |
|
Parental | STSGQNFHSEMDYRGPKNPSKPIKAPSVLPPRLQHPLGIRQHAF---SSGAQSQKSSSEHKNLARTPSQI |
| STSGQNFHSEMDYRGPKNPSKPIKAPSVLPP.LQHPLGIRQHAF...SSGAQSQKSSSEHKNLARTPSQI |
Retrocopy | STSGQNFHSEMDYRGPKNPSKPIKAPSVLPPQLQHPLGIRQHAFSSHSSGAQSQKSSSEHKNLARTPSQI |
|
Parental | MRK-PDRERAEDFDHTNRESHYFGLSPEERREKQAIEESRLLYEIQNRDEQAFPALSMSSVSTSASQSSN |
| MRK...RERAEDFDHTNRESHYFGLSPEERREKQAIEES..L.EIQNRDEQAFP.LSMSSVSTSASQSSN |
Retrocopy | MRK<TGRERAEDFDHTNRESHYFGLSPEERREKQAIEESLIL*EIQNRDEQAFPTLSMSSVSTSASQSSN |
|
Parental | -PCVQRKSSHGSDRKGNRRRMD-TEERKDKDSVHGSTHLDKKPEPSTLENISDDRCARVSSPLKSKKLEC |
| .PCV....S.........RR...T.ERKDKDSVHGSTHLDKKPEPSTLENISDDRCARVSSPLKSKKLEC |
Retrocopy | <PCV-QRESSHGSDRKGNRRRM>TQERKDKDSVHGSTHLDKKPEPSTLENISDDRCARVSSPLKSKKLEC |
|
Parental | PSPAEQKPAEHVSLSNPAPLLVSPEVHLTPAVPSLPATVPAWPSEPTTFGPTGVPAPIPVLSVTQTLTTG |
| PSPAEQKPAEHVSLSNPAPLLVSPEVHLTPAVPSLPATVPAWPSEPTTFGPT....P.....V.Q.L... |
Retrocopy | PSPAEQKPAEHVSLSNPAPLLVSPEVHLTPAVPSLPATVPAWPSEPTTFGPT---VPVSIQAVNQPLMPL |
|
Parental | PDS |
| P.. |
Retrocopy | PQT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .22 RPM |
6 .84 RPM |
SRP017611_kidney |
0 .10 RPM |
7 .70 RPM |
SRP017611_liver |
0 .23 RPM |
6 .47 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_330 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_330 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_330 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.