>retro_ocun_1422
GGCCCTGGCGTACTCAAAGTCCTCTGGCTCACAGCCTCTCAGCCCTGCAGCATCGTGGATGTGGAGTTCCTCCCTGTGTA
TCACCCCAGCCCGGAGGAGAGCAGGGACCCCACCCTCTATGCTAACAATGTCCAGAGGGTCATGACAAAGGCCCTGGGCA
TTCCTGCCACCGAGTGTGAGTTTGTAGGGAGCTTGCCTGTGATTGTGGTGGGCCTGCTGAAGGTGGTGTTGGAGCCGCAG
CTCTGGAACTGGGAAAGGTGCTTCAGAGCTGGCTGTCCCCAGCTGTGTGGACGCTGGGGCAGAGCCAGGCCCGGAGTCGA
ATGATCAGCCAGGAAGAGTTTGCCAGGCAGCTGCGGCTCTCTGGTCCTCAGACAGTGGCTGGTGGCTTTAGCTACTTCCA
GCAGGATGCCCAGGGTTTGGTGGATTTCCGCGATGTGGCACTCTCACTAGCAGCTCTAGATGGGGGCAGGAGCCTGGAGG
AGCTGACCCGCCTGACCTTTGAGCACTTCACTGAGGAGCAGGCAGAGGGGTCTGGCCACGTACTGTACAAAGACGGATTT
AGCACCATCCTGCACCTGCTGCTGGGTTCACCCCACCTTGCTGCCATGACTTAGCATGCTGAGCTGTGCCAGGCAGGACC
CAGCCAAGGCCTCTCCCTCTGTCAATTCTAAAACTTCTCCCTCCATGACCCACTCTATGGGAAGCTGTTCAGCACCTACC
TGCGCCCCCCACACACCCCTCCAGGCACCTCCCAGATGCAACATGCCTCGTCCCCAGGCAGCCCCACTGCTCGGGCCAAT
GGCACTGTATAGGTGCCCAAGCAGAAGGGTGAC
ORF - retro_ocun_1422 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.3 % |
Parental protein coverage: |
53.14 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | GPGVLKVLWLTASQPCSVVDVEFLPVYHPSPEESRDPTLYANNVQRVMAQALGIPATECEFVGSLPVIVV |
| GPGVLKVLWLTASQPCS.VDVEFLPVYHPSPEESRDPTLYANNVQRVM..ALGIPATECEFVGSLPVIVV |
Retrocopy | GPGVLKVLWLTASQPCSIVDVEFLPVYHPSPEESRDPTLYANNVQRVMTKALGIPATECEFVGSLPVIVV |
|
Parental | GRLKVALEPQLW-ELGKVLRKAGLSPGR-VDAGAEPG-RSRMISQEEFARQLQLSDPQTVAGAFSYFQQD |
| G.LKV.LEPQLW.ELGKVL....LSP...VDAGAEPG.RSRMISQEEFARQL.LS.PQTVAG.FSYFQQD |
Retrocopy | GLLKVVLEPQLW<ELGKVL-QSWLSPAV<VDAGAEPG>RSRMISQEEFARQLRLSGPQTVAGGFSYFQQD |
|
Parental | AQGLVDFRDVALALAALDGGRSLEELTRLAFELFAEEQAEGPGRLLYKDGFSTILHLLLGSPHPAATTLH |
| AQGLVDFRDVAL.LAALDGGRSLEELTRL.FE.F.EEQAEG.G..LYKDGFSTILHLLLGSPH.AA.T.H |
Retrocopy | AQGLVDFRDVALSLAALDGGRSLEELTRLTFEHFTEEQAEGSGHVLYKDGFSTILHLLLGSPHLAAMT*H |
|
Parental | AELCQAGPSQGLSLCQFQNFSLHDPLYGKLFSTYLRPPHTPRGTSQMQRASSPGSPTALANGTVQAPKQK |
| AELCQAGPSQGLSLCQF.NFSLHDPLYGKLFSTYLRPPHTP.GTSQMQ.ASSPGSPTA.ANGTV..PKQK |
Retrocopy | AELCQAGPSQGLSLCQF*NFSLHDPLYGKLFSTYLRPPHTPPGTSQMQHASSPGSPTARANGTV*VPKQK |
|
Parental | GD |
| GD |
Retrocopy | GD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .11 RPM |
156 .46 RPM |
SRP017611_kidney |
0 .00 RPM |
13 .58 RPM |
SRP017611_liver |
0 .00 RPM |
4 .32 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1422 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1422 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1422 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.