>retro_ocun_1616
CGGCTGGAGCAGCTGAAGGCCAAGCAGCTGACACAGGATGATGACACTGATGAGGTCGAGATCGCTATTGACAACACAGC
TTTCATGGATGAGGTCTTCTCAGAGATTGAAGAAACTCGGCTCAACATTGACAAGATCTCAGAGCACGTGGAGGAGGCCA
AGAAACTCTACAGTATCATTTTTTCTGCACCAATTCCAGAGCCAAAAACCAAGGATGACCTAGAGCAGCTCACAACTGAG
ATCAAGAAAAGAGCCAACAACGTCCGGAACAAGCTGAAGAGCATGGAGAGGCACATTGAAGAAGATGAGGTCTGGTCATC
TGCAGACCTTCGAATTAGGAAATCTCAGCACTCTGACCTCTCCCGGAAGTTTGTGGAGGTGATGACCAAATACAACGAAG
CTCAGGTGGACTTCCGGGAACGCAGCAAAGGGAGAATCCAGCGGCAGCTTGAAATCACTGGCAAAAAGACAACAGATGAG
GAACTGGAGGAGATATTAGAGAGTGGCAACCCAGCCATCTTACTTTCC
ORF - retro_ocun_1616 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
80.23 % |
Parental protein coverage: |
61.03 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | RLIKLPVKQLTQDDDTDEVEIAIDNTAFMDEFFSEIEETRLNIDKISEHVEEAKKLYSIILSAPIPEPRK |
| RL..L..KQLTQDDDTDEVEIAIDNTAFMDE.FSEIEETRLNIDKISEHVEEAKKLYSII.SAPIPEP.K |
Retrocopy | RLEQLKAKQLTQDDDTDEVEIAIDNTAFMDEVFSEIEETRLNIDKISEHVEEAKKLYSIIFSAPIPEP-K |
|
Parental | MVSKSVLLVVTIKEQFGKTFLSFPGMERHIEEDEVRSSADLRIRKSQHSVLSRKFVEGMTKYNEAQVDFR |
| .......L...IK............MERHIEEDEV.SSADLRIRKSQHS.LSRKFVE.MTKYNEAQVDFR |
Retrocopy | TKDDLEQLTTEIKKRANNVRNKLKSMERHIEEDEVWSSADLRIRKSQHSDLSRKFVEVMTKYNEAQVDFR |
|
Parental | ERSKGRIQRQLEITGKKTTDEELEEMLESGNPAIFTS |
| ERSKGRIQRQLEITGKKTTDEELEE.LESGNPAI..S |
Retrocopy | ERSKGRIQRQLEITGKKTTDEELEEILESGNPAILLS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
1 .71 RPM |
14 .51 RPM |
SRP017611_kidney |
2 .94 RPM |
18 .14 RPM |
SRP017611_liver |
0 .31 RPM |
2 .54 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1616 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1616 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1616 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.