RetrogeneDB ID: | retro_ocun_193 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018773:638450..639842(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000024089 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000011872 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.03 % |
Parental protein coverage: | 98.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGS |
MSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTD.PIPPRDEVFEYIIFRGS | |
Retrocopy | MSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDCPIPPRDEVFEYIIFRGS |
Parental | DIKDLTVCEPPKPQCSLPQDPAIVQSSLGSSASSFQSVGSYGPFGRMPTYSQFSPSSLVGQQFGTVGVAG |
DIKDLTVCEPPKPQCSLPQDPAIVQSSLGSSASSFQSVGSYGPFGRMPTYSQFSPSSLVGQQFGTVGVAG | |
Retrocopy | DIKDLTVCEPPKPQCSLPQDPAIVQSSLGSSASSFQSVGSYGPFGRMPTYSQFSPSSLVGQQFGTVGVAG |
Parental | SSLTSFGTETSNSGTLSQSSAVGSAFTQDTRAIKTQLSQGRSSPQLDPLRKSPTMEQAVQTASAHLPAPA |
SSLTSFGTETSNSGTLSQSSAVGSAFTQDTRAIKTQLSQGRSSPQLDPLRKSPTMEQAVQTASAHL.APA | |
Retrocopy | SSLTSFGTETSNSGTLSQSSAVGSAFTQDTRAIKTQLSQGRSSPQLDPLRKSPTMEQAVQTASAHLSAPA |
Parental | PVGRRSPVSTRPLPSTSQKAIENQEHRRAEVHKVSRPENEQLRNDNKRQVVPGAPSAPRRGRGGHRGGRG |
PVGRRSPVS.RPLPSTSQKAIENQEHR.AEVHKVSRPENEQLRNDNKRQVVPGAPSAPRRGRGGHRGGRG | |
Retrocopy | PVGRRSPVSSRPLPSTSQKAIENQEHRLAEVHKVSRPENEQLRNDNKRQVVPGAPSAPRRGRGGHRGGRG |
Parental | RFGIRRDGPMKFEKDFDFESANAQFNKEEIDREFHNKLKLKVEDKLEKQEKPVNGEDKGDSGVDTQNSEG |
RFGI.RDGPMKFEKDFDFESANAQFNKEEI.REFHNK.KLK.EDKLEKQEKPVNGEDKGDSGVDTQNSEG | |
Retrocopy | RFGIWRDGPMKFEKDFDFESANAQFNKEEIHREFHNKFKLK-EDKLEKQEKPVNGEDKGDSGVDTQNSEG |
Parental | NADEEDPLGPNCYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFRG |
NADEEDPLGPNCYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFRG | |
Retrocopy | NADEEDPLGPNCYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFRG |
Parental | GRGRGSGRGGAFTTPRGFRGAFRGGRGGREFADFEYRK |
GRG.GSGRGGAFTTPRGFRGAFRGGRGGREFADFEYRK | |
Retrocopy | GRGCGSGRGGAFTTPRGFRGAFRGGRGGREFADFEYRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 4 .42 RPM | 21 .47 RPM |
SRP017611_kidney | 4 .87 RPM | 31 .12 RPM |
SRP017611_liver | 2 .39 RPM | 14 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006555 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010360 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000001762 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011598 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003368 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021614 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011713 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011872 | 2 retrocopies |
retro_ocun_193 , retro_ocun_860,
|
Otolemur garnettii | ENSOGAG00000002492 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000009832 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000010813 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000021133 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002785 | 1 retrocopy |