RetrogeneDB ID: | retro_ocun_264 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:54068407..54069583(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000002546 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDHA1 | ||
Ensembl ID: | ENSOCUG00000014748 | ||
Aliases: | None | ||
Description: | pyruvate dehydrogenase (lipoamide) alpha 1 [Source:HGNC Symbol;Acc:8806] |
Percent Identity: | 88.49 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MRKMLAA-VSRVLSGAAQKPASRVLVASRNFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQ |
MR.MLAA.VSRVL.G.A.KPA.RVLVAS.N..NDA.FEIKKCDL..L.EGPP.T.VLTREDGL.YY.MMQ | |
Retrocopy | MREMLAAFVSRVLWGVAKKPARRVLVASCNYSNDAMFEIKKCDLYLLDEGPPLTAVLTREDGLRYYKMMQ |
Parental | TVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELT |
.VRRMELKADQLYKQK.IRGFCHLCDGQEACCVGLEAGINP.DH.IT.YRAHG...TRGL.VR.ILAELT | |
Retrocopy | VVRRMELKADQLYKQKFIRGFCHLCDGQEACCVGLEAGINPSDHVITSYRAHGVCYTRGLPVRSILAELT |
Parental | GRRGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYN |
GRRGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAG.ALACKY.G..E.CLTLYGDGAANQGQI.EAYN | |
Retrocopy | GRRGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGVALACKYMGNNEICLTLYGDGAANQGQIAEAYN |
Parental | MAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGP |
MAALWKLPCIFICENN.YGMGTSVERAAASTDYYKRG.FIPGLRVDGMDILCVREATRFAA.YCRSGKGP | |
Retrocopy | MAALWKLPCIFICENNLYGMGTSVERAAASTDYYKRGHFIPGLRVDGMDILCVREATRFAANYCRSGKGP |
Parental | ILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDA |
ILMELQTYRYHGHSMSDPG.SYR.REEIQ.VRSKSDPIMLL.DRMVNS.LASVEELKEID.EVRKEIEDA | |
Retrocopy | ILMELQTYRYHGHSMSDPGISYRSREEIQKVRSKSDPIMLLQDRMVNSKLASVEELKEIDSEVRKEIEDA |
Parental | AQFATADPEPPLEELGHHIYSSNPPFEVRGANQWIKFKSVS |
AQFAT.DPEPP.EELGHH.YSSNPPFEVRGANQWIKFKSVS | |
Retrocopy | AQFATTDPEPPVEELGHHLYSSNPPFEVRGANQWIKFKSVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 60 .98 RPM |
SRP017611_kidney | 0 .00 RPM | 65 .58 RPM |
SRP017611_liver | 0 .00 RPM | 23 .12 RPM |