RetrogeneDB ID: | retro_ocun_457 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 11:73004380..73004799(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000025764 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HN1 | ||
Ensembl ID: | ENSOCUG00000002950 | ||
Aliases: | None | ||
Description: | hematological and neurological expressed 1 [Source:HGNC Symbol;Acc:14569] |
Percent Identity: | 72.22 % |
Parental protein coverage: | 91.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | TTTTF-KGVDPNSRNSFRVLRPPGGGSNFSLGFDEPTEQPVRKNKMASSIFGTPEENPPSWAKSAGA-KS |
TTTT...G..P......R.LRPP..GSNFSL.FDEPTEQPVRKNKMAS.IFGTPEENPPS.AKSA.A.KS | |
Retrocopy | TTTTT>QGCQPQQQEQ-RGLRPPAAGSNFSLSFDEPTEQPVRKNKMASTIFGTPEENPPSRAKSAAA<KS |
Parental | GGGREDPEPSG-LQRRSSSEASSGDSFDLKGEGDIHENVDTDLQASLGQSEEKPVPAAPVPSPVAPAPAP |
G.GREDPE.SG.L.RR..SEASSGD.FDLK.EGDIHEN.DTDLQASLGQSEEK.VPA.PVP....P.P.. | |
Retrocopy | GVGREDPESSG<LGRRNASEASSGDFFDLKEEGDIHENADTDLQASLGQSEEKSVPAMPVPQLHGPGPVQ |
Parental | SRRN |
..R. | |
Retrocopy | EKRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 55 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .43 RPM |
SRP017611_liver | 0 .00 RPM | 1 .46 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014553 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013294 | 1 retrocopy | |
Homo sapiens | ENSG00000189159 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013996 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013971 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020737 | 6 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000610 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002950 | 2 retrocopies |
retro_ocun_1647, retro_ocun_457 ,
|
Ochotona princeps | ENSOPRG00000010887 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000024246 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003661 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000015171 | 1 retrocopy |