>retro_ocun_546
GCAGGCCTGGTGGCTGAGGCTGAGGCAGTGGCTGCCGGCTGGATGCTGGATTTCCTATGCCTGTCTCTTTGCCAGGCCTT
CCATGATGGCGGCTCCAAGGCCTTCCATCGGACCCGCGACAGCACCGAGGCTATTATTCATGGACTATCCAATCTAACAG
CATATCAGTTGAAAACAATATACATATGTCAGTTTTTGACTAGAATTGCAGCGGGAAAATCCCTGGATGCACAATTTGAA
AATGATTAACGAATTACACCCTTAGAATCAGCCCTTATTATTTGGGCTTCAATTGAAAAGGAACATGACAAACTTCATGA
AAAAATACAGAATTTAATTAAAATCCAGGCTATAGCTGTTTGTATGGGAAATGGCAATTTTAAGGAAGCAGAGGAAGTCT
TTGAAAGAATATTTGGAGATCCAAACTCTTATACGTCTTTAGAAAGAAAGTTGCTTATGATAATATCTCAGAAAGACACA
TTCCATTCCTTTTTTCAACACTTCAGCTACAACCACATGCTGGAGAAAATTAAGAGCCACGTGAATTGTGTGCTAAATGA
AGAATCATCAGCCTTTCTAATGAAGGCAGCAGCAAAAATAGTGGTAAGTAAAAGCAAAAACAATGACTTCTCAAGATAAA
TCTGATGGTAATGATGTTGAAATGGAAACTGAAACTAATTCAGATACAGGAAAAAGTGTTAATGACAAACAGTCTGTGGT
AACTGAATCCTCAGAGGGTACAGTATCCTTATTGAGGTCTCACAAGAATCTCTTATCTAAGCTGAAATATAGAAGCTGGA
GAGAAGACTTTGATGAGGAAGAGGAAAGAGGAAACTCTTCAAAGTGAGAGAGAGAAAACAAAAAAACAGAAGAAACAAAG
AGAACACATGTTCCAGAAACTCAACCAGTAACTTACAAAAAACGACGACCTAGGAAAAAACAGGCATGGCTTTGGGAAGA
AGACAAGAATTTGAGATCTGGTGTGAGGAAATATGGAGAGGGAAGCTGGTCTAAAATACTGTTGCATTACAAATTCAACA
ACCGAACAAGTGTCATGCTGAAAGACAGATGGAGAACTATGAAGAAACTAAAAATGATTTGCTCAGACTGCAAAGAC
ORF - retro_ocun_546 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.77 % |
Parental protein coverage: |
86.47 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | AGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEAFHRTRDSAEAIIHGLSNLTAYQLKTIYICQFLTRIA |
| AGLVAEAEAVAAGWMLDFLCLSLC.AF.DG.S.AFHRTRDS.EAIIHGLSNLTAYQLKTIYICQFLTRIA |
Retrocopy | AGLVAEAEAVAAGWMLDFLCLSLCQAFHDGGSKAFHRTRDSTEAIIHGLSNLTAYQLKTIYICQFLTRIA |
|
Parental | AGKSLEDAQFENDERITPLESALMIWASIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG |
| AGKSL.DAQFEND.RITPLESAL.IWASIEKEHDKLHE.IQNLIKIQAIAVCM.NGNFKEAEEVFERIFG |
Retrocopy | AGKSL-DAQFEND*RITPLESALIIWASIEKEHDKLHEKIQNLIKIQAIAVCMGNGNFKEAEEVFERIFG |
|
Parental | DPKSYTSLERKLLMIISQKDTFHSFFQHFSYNHMMEKIKSYVNCVLNEKSSAFLMKAAAKVVESKR-ART |
| DP.SYTSLERKLLMIISQKDTFHSFFQHFSYNHM.EKIKS.VNCVLN...S......AA........A.T |
Retrocopy | DPNSYTSLERKLLMIISQKDTFHSFFQHFSYNHMLEKIKSHVNCVLN-EESSAFLMKAAAKIVVSK>AKT |
|
Parental | MTSQDKSNGNDVEMETETNSDIGKSVNDKQSTVTESSEGTVSLLRSHKNLLSKLKYRSWREDFDEEEERE |
| MTSQDKS.GNDVEMETETNSD.GKSVNDKQS.VTESSEGTVSLLRSHKNLLSKLKYRSWREDFDEEEER. |
Retrocopy | MTSQDKSDGNDVEMETETNSDTGKSVNDKQSVVTESSEGTVSLLRSHKNLLSKLKYRSWREDFDEEEERG |
|
Parental | ETLQSEREKTESRRTTETNRTRVPETQPVTYKKRRPRKKQAWLWEEDKNLRSGVRKYGEGSWSKILLHYK |
| .....ER...E...T.ET.RT.VPETQPVTYKKRRPRKKQAWLWEEDKNLRSGVRKYGEGSWSKILLHYK |
Retrocopy | NSSK*ER---ENKKTEETKRTHVPETQPVTYKKRRPRKKQAWLWEEDKNLRSGVRKYGEGSWSKILLHYK |
|
Parental | FNNRTSVMLKDRWRTMKKLKMICSDCED |
| FNNRTSVMLKDRWRTMKKLKMICSDC.D |
Retrocopy | FNNRTSVMLKDRWRTMKKLKMICSDCKD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
17 .05 RPM |
SRP017611_kidney |
0 .00 RPM |
9 .53 RPM |
SRP017611_liver |
0 .00 RPM |
2 .77 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_546 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_546 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_546 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
16 retrocopies.