RetrogeneDB ID: | retro_ocun_699 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:62020737..62021142(+) | ||
Located in intron of: | ENSOCUG00000016778 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPM3 | ||
Ensembl ID: | ENSOCUG00000011821 | ||
Aliases: | None | ||
Description: | tropomyosin 3 [Source:HGNC Symbol;Acc:12012] |
Percent Identity: | 69.93 % |
Parental protein coverage: | 50.53 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRK |
RQL.EEELDRAQE.LATALQKLEEAEKAADESERGMK..ENRA.KD....E..EIQ..EAKHIAEEAD.. | |
Retrocopy | RQLLEEELDRAQEQLATALQKLEEAEKAADESERGMKLTENRAMKD----EMMEIQ--EAKHIAEEADHT |
Parental | YEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDK |
Y..VA.KL...EGD.ER..ERAE..E.KC.E.EEE.KNVTN.LKSL.A..EK.S.K.D.Y.EEIK.L..K | |
Retrocopy | YR-VAQKLLTLEGDPERA*ERAEVSERKCGEREEEVKNVTNSLKSLDAASEKHSEKQDIY-EEIKLLSEK |
Parental | LKE |
LK. | |
Retrocopy | LKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 33 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .53 RPM |
SRP017611_liver | 0 .00 RPM | 8 .79 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011877 | 2 retrocopies | |
Bos taurus | ENSBTAG00000033217 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000017311 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000007279 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019156 | 7 retrocopies | |
Equus caballus | ENSECAG00000010942 | 1 retrocopy | |
Felis catus | ENSFCAG00000012596 | 1 retrocopy | |
Homo sapiens | ENSG00000143549 | 9 retrocopies | |
Myotis lucifugus | ENSMLUG00000013331 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010805 | 10 retrocopies | |
Mustela putorius furo | ENSMPUG00000007875 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027940 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009884 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011821 | 2 retrocopies |
retro_ocun_699 , retro_ocun_8,
|