Parental gene:

TPM3, ENSCAFG00000017311

Aliases:None
Description:Canis lupus familiaris tropomyosin 3 (TPM3), mRNA. [Source:RefSeq mRNA;Acc:NM_001252211]
Organism:Dog (Canis familiaris)
Coordinates:7:43039459..43067297(+)


>ENSCAFG00000017311
ATGATGGAGGCCATCAAGAAAAAGATGCAGATGCTGAAGTTGGACAAAGAGAATGCTCTGGACCGGGCAGAGCAAGCTGA
AGCTGAGCAGAAGCAGGCAGAAGAGAGAAGTAAACAGCTGGAAGATGAGCTGGCTGCCATGCAGAAGAAGCTGAAAGGGA
CAGAGGACGAGCTTGACAAGTACTCTGAGGCCCTGAAAGATGCGCAGGAGAAGCTGGAGCTGGCAGAGAAGAAGGCTGCT
GACGCTGAGGCTGAGGTGGCCTCCTTGAACCGTAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGCGCCCAGGAGCGCCT
GGCCACTGCCCTGCAAAAGCTGGAGGAAGCGGAGAAAGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTTATTGAGAATC
GAGCCTTAAAAGATGAAGAAAAGATGGAACTCCAGGAAATCCAACTCAAAGAGGCCAAGCACATTGCAGAAGAGGCAGAC
CGGAAGTATGAAGAGGTGGCTAGGAAGTTGGTGATCATTGAGGGGGACTTGGAACGTACAGAGGAACGAGCTGAGCTGGC
AGAGTCTAAGTGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCACCAACAACCTCAAGTCTCTTGAGGCTCAGGCGGAGA
AGTACTCTCAAAAGGAAGACAAATATGAGGAAGAGATAAAGATTCTCACGGATAAACTCAAGGAGGCAGAGACCCGTGCT
GAGTTTGCTGAGAGATCGGTAGCCAAGCTGGAGAAGACAATTGATGATTTGGAAGATGAGCTCTATGCCCAGAAACTGAA
GTACAAGGCCATTAGTGAGGAGCTGGACCACGCCCTCAATGACATGACCTCTATG

Library Parental gene expression (RPM)
SRP012049_cerebellum 71 .19 RPM
SRP017611_brain 56 .13 RPM
SRP017611_kidney 12 .41 RPM
SRP017611_liver 9 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011877 ortholog_one2one 2 retrogenes
retro_amel_1017, retro_amel_1212,
Bos taurus ENSBTAG00000033217 ortholog_one2one 3 retrogenes
retro_btau_1166, retro_btau_210, retro_btau_933,
Canis familiaris ENSCAFG00000015796 within_species_paralog 1 retrogene
retro_cfam_2107,
Canis familiaris ENSCAFG00000016966 within_species_paralog 1 retrogene
retro_cfam_2167,
Cavia porcellus ENSCPOG00000007279 ortholog_one2one 1 retrogene
retro_cpor_150,
Dasypus novemcinctus ENSDNOG00000019156 ortholog_one2one 7 retrogenes
retro_dnov_1322, retro_dnov_1767, retro_dnov_329, retro_dnov_451, retro_dnov_848, retro_dnov_878, retro_dnov_944,
Equus caballus ENSECAG00000010942 ortholog_one2one 1 retrogene
retro_ecab_390,
Felis catus ENSFCAG00000012596 ortholog_one2one 1 retrogene
retro_fcat_1441,
Homo sapiens ENSG00000143549 ortholog_one2one 9 retrogenes
retro_hsap_1482, retro_hsap_1639, retro_hsap_2001, retro_hsap_2011, retro_hsap_2012, retro_hsap_2237, retro_hsap_2395, retro_hsap_3711, retro_hsap_3893,
Myotis lucifugus ENSMLUG00000013331 ortholog_one2one 1 retrogene
retro_mluc_1038,
Macaca mulatta ENSMMUG00000010805 ortholog_one2one 10 retrogenes
retro_mmul_1019, retro_mmul_1240, retro_mmul_1384, retro_mmul_1385, retro_mmul_1703, retro_mmul_1829, retro_mmul_2128, retro_mmul_2354, retro_mmul_314, retro_mmul_880,
Mustela putorius furo ENSMPUG00000007875 ortholog_one2one 1 retrogene
retro_mputfur_604,
Mus musculus ENSMUSG00000027940 ortholog_one2one 1 retrogene
retro_mmus_21,
Oryctolagus cuniculus ENSOCUG00000011821 ortholog_one2one 2 retrogenes
retro_ocun_699, retro_ocun_8,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_983 93.95 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cfam_1278 79.10 79.84
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cfam_1678 83.40 99.19
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_cfam_2089 85.00 80.65
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCAFG00000017311 retrocopies