>retro_ocun_82
ATGATGTTTAACAGCTTTGAAGGATCTAAAACGTGTGTGTCTGCAGACAGCAATAAAGATGAAGAATTTGTAGAAGAGTT
TAACAGATTAAGAACCTTCACTGGTTTTCCAAGTGATAGTCCTGTTTCAGCAGCAACACTGGCTCGAGCAGGGTTTCTAT
ATGCTGGAGAAGGAGACACTGTACGATGCTTTAGTTGTCGTGCAGCAGTGGACAGGTGCATGTACGGAGACTCAGCAGTT
GGAAGACACAGGGCAGTATCCCCAAATTGCAGATTTATCAATGGCTTTTATTTTGAAAACAGTGCCACACAACCTACAAA
TCCTGGTGTCCAAAATGGTGAATACAGAAGTGCAGACGACCTGGGAAACAGAAATCATTTTGCTTTGGACGGACCATCTG
AGACTCCTGCAGACCCTCCTTTGAGAACTGGACAGATTGTAGGTACCCCAGACACTGTATACCCGAGGAACCCTGAGATG
TGTAGTGAAGAAGCTAGATTAGAGTCCTTTCAGAACTGGCCAGATTATGTCCACTTAACTCCCAGAGAGTTAGCCAGTGC
TGGGCTCTACTACACAGGTATTGATGATCAAGTGCAGTGCTTTTGTTGTGGTGGAAAACTGAAAAACTGGGAACCTGGCA
ATCGTGCCTGGTCAGAACACAGGCAGCACTTTCCTACTTGCTTCTTTGTTGTGGGCAGGGGTGTTAATAATCAAAGTGAA
TTTAATATTGTGAGTTCTGATAGGAATTTCTCAGATTCAACAAATCCTCCAAGAAACCCAGCCATGGCAGATTATGCTGC
TCGGATCATTACTTTTGGATCATGGAGATACTCAGTTAACAAGGAGAAGCTTGCAAGAGCTGGATTGTACTGTTTAGGTG
AAGGTGATCAAGTAGAGTGCTTTCACTGTGGAGGGGGCTTAACTGACTGGGAGCCCAGTGATGATCCTTGGGAGCAACAT
GCTAAGTGGTATCCAGGGTGTGAATATGTATTAGAAAAGAAAGGACAAGGGTACATCAATAATATTCATCTGACCCATTC
ACTTAAGGAGTCTCCAGCAAGGGCTGCTGGGAAAATACCATCACTATCCGAAAGAATTGTTGATCCCATCTTCCAAAGTC
CTGTGGTACAAGAAACTCTGAGAATGGGATTCAGTTTCAGGGAGATTAAGAAAATGATGGAGGAAAAAGTACAGAGGTGT
GGGAGCAACTATAAATCACTTGAGGTTGCAGATCTAGTGACTGCTCAGAAAAACAGTCCACACGATGAATCAAGTCAGGC
TTCCTTGCAGAAAGAAGTTAGCACTGAAGAGCAGCTAAGGCGCCTGCAAGAGGAGCGGCTTTGCAAAATCTGTATGGACA
GAAATACTGCTGTTGTTTTTATTCCTTGTGGACATCTGGTCACTTGTAACACATGTGCTGAAGCAGTTGACAAATGTCCC
ATGTGCTACACAGTCATTACTTTCAAGCAAAAAATTTTTACATCTTAA
ORF - retro_ocun_82 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
81.89 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MTFNSFEGSKTCVPADINKDEEFVEEFNRLKTFANFPSSSPVSASTLARAGFLYTGEGDTVRCFSCHAAV |
| M.FNSFEGSKTCV.AD.NKDEEFVEEFNRL.TF..FPS.SPVSA.TLARAGFLY.GEGDTVRCFSC.AAV |
Retrocopy | MMFNSFEGSKTCVSADSNKDEEFVEEFNRLRTFTGFPSDSPVSAATLARAGFLYAGEGDTVRCFSCRAAV |
|
Parental | DRWQYGDSAVGRHRKVSPNCRFINGFYFENSAAQSTNPGVQNGQYKGENYLGNRNHFALDRPSETHADYL |
| DR..YGDSAVGRHR.VSPNCRFINGFYFENSA.Q.TNPGVQNG.Y.....LGNRNHFALD.PSET.AD.. |
Retrocopy | DRCMYGDSAVGRHRAVSPNCRFINGFYFENSATQPTNPGVQNGEYRSADDLGNRNHFALDGPSETPADPP |
|
Parental | LRTGQVVDISDTIYPRNPAMCSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIDDQVQCFCCGGKLKNW |
| LRTGQ.V...DT.YPRNP.MCSEEARL.SFQNWPDY.HLTPRELASAGLYYTGIDDQVQCFCCGGKLKNW |
Retrocopy | LRTGQIVGTPDTVYPRNPEMCSEEARLESFQNWPDYVHLTPRELASAGLYYTGIDDQVQCFCCGGKLKNW |
|
Parental | EPCDRAWSEHRRHFPNCFFVLGRNVNIRSESDVVSSDRNFPNSTNPPRNPAMADYEARIISFGTWIYSVN |
| EP..RAWSEHR.HFP.CFFV.GR.VN..SE...VSSDRNF..STNPPRNPAMADY.ARII.FG.W.YSVN |
Retrocopy | EPGNRAWSEHRQHFPTCFFVVGRGVNNQSEFNIVSSDRNFSDSTNPPRNPAMADYAARIITFGSWRYSVN |
|
Parental | KEQLARAGFYALGEGDKVKCFHCGGGLTDWKPNEDPWEQHAKWYPGCKYLLEEKGQEYINNIHLTHSLEE |
| KE.LARAG.Y.LGEGD.V.CFHCGGGLTDW.P..DPWEQHAKWYPGC.Y.LE.KGQ.YINNIHLTHSL.E |
Retrocopy | KEKLARAGLYCLGEGDQVECFHCGGGLTDWEPSDDPWEQHAKWYPGCEYVLEKKGQGYINNIHLTHSLKE |
|
Parental | SLARTAENTPSQTKRIDDTIFQSPMVQEAIRMGFSFREIKKIMEEKVQMCGSNYKSLEVLVADLVNAQKS |
| S.AR.A...PS...RI.D.IFQSP.VQE..RMGFSFREIKK.MEEKVQ.CGSNYKSLE..VADLV.AQK. |
Retrocopy | SPARAAGKIPSLSERIVDPIFQSPVVQETLRMGFSFREIKKMMEEKVQRCGSNYKSLE--VADLVTAQKN |
|
Parental | STQDESSQTSLQKEVSTEEQLRRLQEEKLCKICMDRNIAVVFIPCGHLVTCKQCAEAVDKCPMCYTVITF |
| S..DESSQ.SLQKEVSTEEQLRRLQEE.LCKICMDRN.AVVFIPCGHLVTC..CAEAVDKCPMCYTVITF |
Retrocopy | SPHDESSQASLQKEVSTEEQLRRLQEERLCKICMDRNTAVVFIPCGHLVTCNTCAEAVDKCPMCYTVITF |
|
Parental | KQKIFMS |
| KQKIF.S |
Retrocopy | KQKIFTS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .50 RPM |
25 .28 RPM |
SRP017611_kidney |
0 .00 RPM |
20 .27 RPM |
SRP017611_liver |
0 .00 RPM |
14 .34 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_82 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_82 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_82 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
6 retrocopies.