RetrogeneDB ID: retro_ogar_1261

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873540.1:17700110..17700996(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GLYAT
• Ensembl ID: ENSOGAG00000007533
• Aliases: None
• Description: glycine-N-acyltransferase [Source:HGNC Symbol;Acc:13734]

Sequence

>retro_ogar_1261
ACGATGTCACTGTTTCAAGGGGCCAAGGTGCTGCAGACGCTGAAGGAAGCCTTGAGGTAGAGCCTCCCTGAGTCCATAAA
AGTTTGTGGGACTGTCTTTCACATAAGACAGGGAAACCCATTCAAGCTAAAGGCCCTGGTGGACAAGTGGCCTGATTTTA
AGTACACTGGTTGTCCGCCCTCAGGAACAGGATATGATAGATGACCTTGATCACTATACCAATACTTACCAAATCTACTC
CAGAGATCCCCCAAACTGCTAAGAATTCCTTGGTTCATCAGAAGTTGTCGGTTGGAAGCAGCATCTACAAATTCAAAGTT
CACAGCCCAGCTTGAATGACATGATAGAAAATCTTGCCGCCACTAAATCTTTCAAACTCAAAGGAACATAATGCATTCTC
CAAGTAACATCTGAGATAGCCAAGAAACTGGCTCCTTCCCTGATGGATACACAGACTTTATCACCCAGTGGTAGCAAACC
CAAGCCCATCAACCAAGAGATGTTTAAACTCTCATCCCTGGATATTACACATACTACCTTGGTGAATTAGTTTTGGTCTT
TTGGAGGCAATGAGAGAAACCAGAGATTTATTGAGCCCTGTATCCAGGCCTTCCTCAGCTTCTGTCTGGGGCCTGAGGGG
ACCCCCGTGTCCTGGAGCCTAATGGACCAGACTGGAGAGATGCGGATGGCAGGCACCATGCCAGAGTACCAGCTCCATAG
CTTAATGTCCTACACGGCCTATTTCCAGAGTTGGACAATGAACAGACTTGGCTTTCCCCTCTATTCTCATGTAGACAACA
ACAACAAAGCTATACACAAAAGAGCTCAGAATCTGCATTATATCCCCATCGCAGGAGGCTGGGACCAGTGGAACTGTGTG
CCTCTG

Alignment

ORF - retro_ogar_1261 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.07 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  TMSLLQGAKVLQTLEEALRKSLPESIKVYGTVFHIRQGNPFKLMALVDKWPDF-NTVVVRPQEQDMIDDL
          TMSL.QGAKVLQTL.EALR.SLPESIKV.GTVFHIRQGNPFKL.ALVDKWPDF..T.VVRPQEQDMIDDL
Retrocopy TMSLFQGAKVLQTLKEALR*SLPESIKVCGTVFHIRQGNPFKLKALVDKWPDF>STLVVRPQEQDMIDDL

Parental  DHYTNAYQIYSKDLQNCQEFLGSPDVINWKQHLQIQSSQPSLNQVIEHLADTKSFKVKRTQRILYIAPQT
          DHYTN.YQIYS.D..NC.EFLGS..V..WKQHLQIQSSQPSLN..IE.LA.TKSFK.K.T..IL......
Retrocopy DHYTNTYQIYSRDPPNC*EFLGSSEVVGWKQHLQIQSSQPSLNDMIENLAATKSFKLKGT*CILQVTSEI

Parental  AKKLAPSLLDTQNLPPTDGKPKPINQEMFKPTSLDVTHAALVNELWALGGNERSQKFIERCIQAFPNICL
          AKKLAPSL.DTQ.L.P...KPKPINQEMFK..SLD.TH..LVN..W..GGNER.Q.FIE.CIQAF...C.
Retrocopy AKKLAPSLMDTQTLSPSGSKPKPINQEMFKLSSLDITHTTLVN*FWSFGGNERNQRFIEPCIQAFLSFC-

Parental  LGPEGTPVSWSLMDQTGEMRMAGTLPEYRNHGLVSYVVYAHEQTTDRLGFPIYAHVDNNNKAMQKMSHNL
          LGPEGTPVSWSLMDQTGEMRMAGT.PEY..H.L.SY..Y....T..RLGFP.Y.HVDNNNKA..K...NL
Retrocopy LGPEGTPVSWSLMDQTGEMRMAGTMPEYQLHSLMSYTAYFQSWTMNRLGFPLYSHVDNNNKAIHKRAQNL

Parental  HHVPIPGGWNQWNCVPL
          H..PI.GGW.QWNCVPL
Retrocopy HYIPIAGGWDQWNCVPL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1261 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000004661	1 retrocopy	retro_etel_2034,
Otolemur garnettii	ENSOGAG00000007533	1 retrocopy	retro_ogar_1261 ,