RetrogeneDB ID: retro_ogar_1649

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873558.1:7319420..7319860(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANAPC10
• Ensembl ID: ENSOGAG00000006902
• Aliases: None
• Description: anaphase promoting complex subunit 10 [Source:HGNC Symbol;Acc:24077]

Sequence

>retro_ogar_1649
GGATTTGGAGTTGATCAATTACGAGATGACAATCTACAAACTTACTAGCAATCAGATGGTTCCCAGCCACATTTAGTGAA
CATTCAATTCAGAAGAAAAACAACAGTGAAGACATTGTGTATTTATGCAGACTACAAATCTGATGAAAGCTATACTCCAA
GCAAGATTTCAGTCAGAGTAGGAAATAATTTTCATAACCTTCAAGAAATTCGGCAACTAGAATTGGTGGAACCAAGTGGC
TGGATTCACGTTCCCTTCACTGATAATCATAAGAAGCCAACCCTCACATTCATGATACAGATTGCTGTTCTAGCCAATCA
CCAGAATGGAAAGACACCCAAATGAGACAAATTAAAATAGACACACCAGTGGAAGAAAGCTCCATTGGTAAATGTCCTCG
ATGTACAACTATTGATTTCATGATGTACCATTCAATAAGG

Alignment

ORF - retro_ogar_1649 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.24 %
• Parental protein coverage: 79.46 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEI
          GFGVDQLRDDNL.TY.QSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEI
Retrocopy GFGVDQLRDDNLQTY*QSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEI

Parental  RQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNG-RDTHMRQIKIYTPVEESSIGKFPRCTTID
          RQLELVEPSGWIHVP.TDNHKKPT.TFMIQIAVLANHQNG..DT.MRQIKI.TPVEESSIGK.PRCTTID
Retrocopy RQLELVEPSGWIHVPFTDNHKKPTLTFMIQIAVLANHQNG<KDTQMRQIKIDTPVEESSIGKCPRCTTID

Parental  FMMYRSIR
          FMMY.SIR
Retrocopy FMMYHSIR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1649 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000002663	2 retrocopies	retro_cjac_2683, retro_cjac_2999,
Dipodomys ordii	ENSDORG00000016690	1 retrocopy	retro_dord_202,
Homo sapiens	ENSG00000164162	1 retrocopy	retro_hsap_152,
Gorilla gorilla	ENSGGOG00000025091	1 retrocopy	retro_ggor_241,
Myotis lucifugus	ENSMLUG00000008607	1 retrocopy	retro_mluc_1679,
Macaca mulatta	ENSMMUG00000004432	1 retrocopy	retro_mmul_374,
Mus musculus	ENSMUSG00000036977	1 retrocopy	retro_mmus_1511,
Nomascus leucogenys	ENSNLEG00000005453	1 retrocopy	retro_nleu_1498,
Otolemur garnettii	ENSOGAG00000006902	2 retrocopies	retro_ogar_1649 , retro_ogar_2510,
Pongo abelii	ENSPPYG00000015096	1 retrocopy	retro_pabe_468,
Pan troglodytes	ENSPTRG00000016480	1 retrocopy	retro_ptro_149,
Pteropus vampyrus	ENSPVAG00000013169	2 retrocopies	retro_pvam_1245, retro_pvam_1450,