RetrogeneDB ID: | retro_ogar_1926 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873574.1:3619783..3620119(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1G2-DDX39B | ||
Ensembl ID: | ENSOGAG00000032085 | ||
Aliases: | None | ||
Description: | ATP6V1G2-DDX39B readthrough (NMD candidate) [Source:HGNC Symbol;Acc:41999] |
Percent Identity: | 58.97 % |
Parental protein coverage: | 95.76 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | QGIQQ-LLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREQEFQSKQQAAMGSQGNLSAEVE |
QGIQQ..LQAEK..AEKVA.ARKRKA..LK.AKEEAQME..QY.R.......S..Q....S.....AE.. | |
Retrocopy | QGIQQ<VLQAEK*MAEKVAGARKRKAGQLKWAKEEAQMEAVQYCRDSKNSRVSSRQ-PWAS*ETCLAEMD |
Parental | QATRRQVQ-GMQSSQQ-RNRERVL-AQLLGMVCDVRPQVHPNYRIPA |
QATR.QV..G...S.Q.RN.E.VL.AQ.L.MVCD.R.QVHPNYR..A | |
Retrocopy | QATRLQVE<GALQSSQQRNQEQVL<AQPLSMVCDIRSQVHPNYRTAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000008277 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010103 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000032085 | 1 retrocopy |
retro_ogar_1926 ,
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