RetrogeneDB ID: | retro_ogar_2020 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873581.1:9423623..9424078(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | AGPAT1 | ||
| Ensembl ID: | ENSOGAG00000010187 | ||
| Aliases: | None | ||
| Description: | 1-acylglycerol-3-phosphate O-acyltransferase 1 [Source:HGNC Symbol;Acc:324] |
Retrocopy-Parental alignment summary:
>retro_ogar_2020
AAAATCTTGCATCTAATGCTGCTCCATATCAAATACCTGTATGGGATCCGAGTAGAGGTGTGAGGGGCTCACCACTTCCC
TCCTTCGCAGACCTATGTTGTCTCCAACCACCAGAGCTCCCTCTACCAGCTTGGGATGATGGAGGTACTGTCAGGCCACT
GTGTGCCCATTGCCAAGCATGAGCTACTGTGGGCCGGCTCTACTGGGCTGGCCTGCTCACTAGCAGGTGTCCTCTTCATT
GAACGGAAGCATATGGGGGATGCCATCGGTGTCATGTCTAAGGTTGCTCAGACCCTGCTCACCCAGGATGTAGGGTCTGG
GTTTTTCCTGAGGGAACAAGAAACCATAACAGCTCCATGCTGCCCTTCAAACATGGCATTTTCCATCTTGCAGTGCAAGC
TCAGGTTCCCATTGTCCCAATAGTCATGTCCTCCTATCAAGACTTCTACTGCAGG
ORF - retro_ogar_2020 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 85.71 % |
| Parental protein coverage: | 53.31 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | KILRLMLLHIKYLYGIRVEVRGAHHFPPSQPYVVVSNHQSSLDLLGMMEVLPGRCVPIAKRELLWAGSAG |
| KIL.LMLLHIKYLYGIRVEV.GAHHFPPSQ.YVV.SNHQSSL..LGMMEVL.G.CVPIAK.ELLWAGS.G | |
| Retrocopy | KILHLMLLHIKYLYGIRVEV*GAHHFPPSQTYVV-SNHQSSLYQLGMMEVLSGHCVPIAKHELLWAGSTG |
| Parental | LACWLAGVIFIDRKRTGDAISVMSEVAQTLLTQDV-RVWVFPEGTRNHNGSMLPFKRGAFHLAVQAQVPI |
| LAC.LAGV.FI.RK..GDAI.VMS.VAQTLLTQDV.RVWVFPEGTRNHN.SMLPFK.G.FHLAVQAQVPI | |
| Retrocopy | LACSLAGVLFIERKHMGDAIGVMSKVAQTLLTQDV<RVWVFPEGTRNHNSSMLPFKHGIFHLAVQAQVPI |
| Parental | VPIVMSSYQDFYCK |
| VPIVMSSYQDFYC. | |
| Retrocopy | VPIVMSSYQDFYCR |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2020 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000010187 | 1 retrocopy |
retro_ogar_2020 ,
|