RetrogeneDB ID: retro_ogar_2044

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873584.1:10284713..10287800(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000028596
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MORC2
• Ensembl ID: ENSOGAG00000009971
• Aliases: None
• Description: MORC family CW-type zinc finger 2 [Source:HGNC Symbol;Acc:23573]

Sequence

>retro_ogar_2044
ATGGCCTTCACAAATTATAGCAGTCTGAATCGAGCTCAGCTAACCTTTGATTATCTGCTGACACATTCAACCACTTACGA
ATTCTTATTTGGTGCTCTTGCCGAACTGGTTGATAACGCAAGAGATGCTGATGCCACCAGAATAGATATTTATGCAGAAA
GGCGAGAGGACCTTCGAGGAGGATTTATGCTTTGCTTTTTGGATGATGGAGCAGGAATGGATCCGAGCGATGCTGCCAGT
GTGATCCAGTTTGGGAAGTCGGCCAGGAGAACTGAATCCACCCAGATTGGGCAGTACGGGGATGGGTTAAAATGGGGCTC
AATGCGCATTGGGAAGGATTTTATCCTCTTCACCAAGAAGGACAACACCATGACTTGCCTCTTCCTGTCTCGCACCTTTC
ATGAGGAAGAGGGCGTTGATGAAGTGCTAGTTCCATTGCCTACCTGGAACGCTCACACCTGGGAACCGATCACAGATAAC
ATGGAGAAGTTTGCCATCGAGACAGAACTTATCTACAAGTACTCTCCCTTTCACAATGAGGAGGAAGTGATGACCCAGTT
CATGAAGATTCCTGGGGACAGTGGAACACTGGTGATCATCTTTAATCTCAAACTCTTGTACAATGGAGAGCCAGAACTAG
ATGTAATCTCCAATCCAGAAGATATCCAGCTGACAGAGACCTGCCCGGAGGACACGAAGCCAGAGCGGCGCTCGTTCCGT
GCCTATGCTGCTGTGCTCTATCTTGATCCCCGGATGCGGATCTTCATCCATGGGCATAAGGTGCAGGCCAAGAGGCTCTC
CTGCTGCCTGTACAAACCCAGGATGTACAAGTTCACATCAAGCCGTTTTAAGACCCGTGCAGAGCAGCAGGTGCAGAAGG
TAGAGCACGCAGCAAGGATTGCTGAAGAGAAGGCGCAGGAGGCGGAGAGCCAAGCTCGGACACTAGAACTGTGCCTCGAT
GGAGACTTCTCTCACGACTCCAGGGTGACGCTGCGACAGGTGCAGAACACAGCTATCACCCTGCGCAGAGAAGCTGATAT
CAAGAAAAGGATCAAGGAGGCCAAGCAGAGAGCACTTAAAGAACCTAAGGAACTGACTTTCACTTTTGGGATCAACATCG
AACACCGGGACCTTGATGGCATGTTCATCTACAACCGTAGCCGCCTGATCAAGATGTATGAGAAAGTGGGGCCACAGCTG
GAAGGGGGCATGGCCTGTGGTGGGGTGGTTGGGGTTGTCGATGTCCCCTACCTGGTCCTGGAGCCTACACACAACAAGCA
GGACTTTGCTGATGCCAAGGAGTACCGACACCTACTGCGAGTTATGGGGGAGCATCTGGCGCAGTACTGGAAGGATATTG
CTATTGCCCAGCGGGGTATCATCAAGTTCTGGGATGAATTTGGCTACCTCTCTACCAACTGGAACCAGCCCCCATCCAGT
GAGCTGCGTTACAAACGCCGGAGAGCTATGGAAATCCCAACCACCATCCAGTGTGATCTGTGTCTGAAGTGGAGGACCCT
CCCCTTCCAACTGAGTGTTGTGGAAAAAGATTACCCTGACACTTGGGTTTGCTCCATGAACCCTGATCTTGAGCACGACT
GGTGTGAGGCTTCTGAGCAGAAGCTGAAGATTCCCCTGGGAACATTCAAAAAAGACGCAAAATCACAAGAAGAAAAGCAG
AAACGGCTCACCGAGAAGATTCGACAGCAGCAGGAGAAGCTGCAGGCCCTTCGGAAAATTAAACCTATCCGCTCCCAAGC
TGACCTGAAGAAATTGCCCTTGGAAGTGACCACCAGACCTTCCACTGAGGAACCTGCACGGAGACCTCAGCATCCTTGGT
CGCCCCCTTTACCAGCTGTGATCAGGAATGCCCTGAGCAGACCCCCTTCCATGCAAGCTCCAGCCAGCCAGCCTCGAAAG
GCTCATGTTATCAGCAGCACCCCAAAACCCCCTGCCTTGGCAGCCCGGGAGGAGGCTGGTACATCAAGAACGTTCCAGCT
ACCTGAGGCACCCCAAAAGCCTATGAACACACCAGTCAAGACTGCCACCTGGCCTATCCCTCCGATACAGCTACTGGCAC
CATCTCCACTGCCCAACTCCAAGAGCAGCCGAGAGCTTCCTGCCTCTAAAGTCATCAAGATCCCAGCGGTCAAGAAGCCA
GAACCACCCACTAAACTCCCCACAGCTACCCCTGGTCAGAAGCGAAGTCTTGGGGTCTTTGATGAGGAAGAAGGCGAGGA
AGAGACTGAGGGGAGGAAGGAGAAGTGTAAGCGGGGCCAATTTGCCGTGAAGGAGGAAAAAAAGGCCTTGAAGGAGCTCT
CGGACAGCGCTGGGGAAGAGGATTCAGCCGAGGTAGAGACGGCTCCGCAGGATGAAGGGCTGCCCGTGGAGGTGTGTGTG
AACGGGCAGTGGTACACAGGCCGTGTTACAGCCGTGGAGGGCGGCCAGCATGTGGTGCGATGGCAGGTGAAATTTGACTA
CGTGCCCACCGACCCGATGCCGCGAGACCGCTGGGTGGAGAAAGGCAGCGAGGATGTGCGGCTGATGAAGCCCCCTTCTC
CAGAGAATCAGAGCCCTGACACACAGCAGGCAGGTGGGGACGAGGAGGAGACCCAGGTGGCCCAGCAGGCTGGAGCCATG
GTGGAGCCCTGCACTTCCGAGAGCATCCGCATTGAGCCCGACACCACTGCCCCAAACACCAGCCATGAGACCATTGACCT
GCTTGTCCAGATGCTCCGAAATTGTTTGCAGTACTTCCTGCCTCTGGGTTTCCCCATCTCAAAGCAGGAGCTGAGCGCTA
TGAATTCAGAGGAGCTGATAGCTTTTCCCCTGAACGAGTACTTCGAGCAGTATAAAGCGGAGCTGCAGAATCTCTGCCAG
TCCTACCAAAGCCCTGCCGAGTCCCGGGCCAAGGCTTCTGAGGCAAGCCTGCACATCTCGGAGAAGAAGCTGCGTGAGAC
GGAGGAGAAGCTACAGAGACTGAGGAGCAACGTCGCAGCACTCCTGCAAAAGGTGCAGCAGGACATTGACATCAGCACAG
ATGATGAGCTGGATGCCTACATTGCGGACCTCCTCACCGAGGGGAAC

Alignment

ORF - retro_ogar_2044 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.85 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAFTNYSSLNRAQLTFEYLHTNSTTHEFLFGALAELVDNARDADATRIDIYAERREDLRGGFMLCFLDDG
          MAFTNYSSLNRAQLTF.YL.T.STT.EFLFGALAELVDNARDADATRIDIYAERREDLRGGFMLCFLDDG
Retrocopy MAFTNYSSLNRAQLTFDYLLTHSTTYEFLFGALAELVDNARDADATRIDIYAERREDLRGGFMLCFLDDG

Parental  AGMDPSDAASVIQFGKSAKRTPESTQIGQYGNGLKSGSMRIGKDFILFTKKEDTMTCLFLSRTFHEEEGI
          AGMDPSDAASVIQFGKSA.RT.ESTQIGQYG.GLK.GSMRIGKDFILFTKK..TMTCLFLSRTFHEEEG.
Retrocopy AGMDPSDAASVIQFGKSARRT-ESTQIGQYGDGLKWGSMRIGKDFILFTKKDNTMTCLFLSRTFHEEEGV

Parental  DEVIVPLPTWNAQTREPVTDNVEKFAIETELIYKYSPFRNEEEVMTQFMKIPGDSGTLVIIFNLKLMDNG
          DEV.VPLPTWNA.T.EP.TDN.EKFAIETELIYKYSPF.NEEEVMTQFMKIPGDSGTLVIIFNLKL..NG
Retrocopy DEVLVPLPTWNAHTWEPITDNMEKFAIETELIYKYSPFHNEEEVMTQFMKIPGDSGTLVIIFNLKLLYNG

Parental  EPELDIISNPRDIQMAETSPEGTKPERRSFRAYAAVLYIDPRMRIFIHGHKVQTKRLSCCLYKPRMYKYT
          EPELD.ISNP.DIQ..ET.PE.TKPERRSFRAYAAVLY.DPRMRIFIHGHKVQ.KRLSCCLYKPRMYK.T
Retrocopy EPELDVISNPEDIQLTETCPEDTKPERRSFRAYAAVLYLDPRMRIFIHGHKVQAKRLSCCLYKPRMYKFT

Parental  SSRFKTRAEQEVKKAEHVARIAEEKAREAESKARTLELRLGGDLTRDSRVMLRQVQNTAITLRREADVKK
          SSRFKTRAEQ.V.K.EH.ARIAEEKA.EAES.ARTLEL.L.GD...DSRV.LRQVQNTAITLRREAD.KK
Retrocopy SSRFKTRAEQQVQKVEHAARIAEEKAQEAESQARTLELCLDGDFSHDSRVTLRQVQNTAITLRREADIKK

Parental  RIKEAKQRALKEPKELNFIFGVNIEHRDLDGMFIYNCSRLIKMYEKVGPQLEGGMACGGVVGVVDVPYLV
          RIKEAKQRALKEPKEL.F.FG.NIEHRDLDGMFIYN.SRLIKMYEKVGPQLEGGMACGGVVGVVDVPYLV
Retrocopy RIKEAKQRALKEPKELTFTFGINIEHRDLDGMFIYNRSRLIKMYEKVGPQLEGGMACGGVVGVVDVPYLV

Parental  LEPTHNKQDFADAKEYRHLLRAMGEHLAQYWKDIAIAQRGIIKFWDEFGYLSANWNQPPSSELRYKRRRA
          LEPTHNKQDFADAKEYRHLLR.MGEHLAQYWKDIAIAQRGIIKFWDEFGYLS.NWNQPPSSELRYKRRRA
Retrocopy LEPTHNKQDFADAKEYRHLLRVMGEHLAQYWKDIAIAQRGIIKFWDEFGYLSTNWNQPPSSELRYKRRRA

Parental  MEIPTTIQCDLCLKWRTLPFQLSSVEKDYPDTWVCSMNPDPEQDRCEASEQKQKVPLGTFKKDSKTQEEK
          MEIPTTIQCDLCLKWRTLPFQLS.VEKDYPDTWVCSMNPD.E.D.CEASEQK.K.PLGTFKKD.K.QEEK
Retrocopy MEIPTTIQCDLCLKWRTLPFQLSVVEKDYPDTWVCSMNPDLEHDWCEASEQKLKIPLGTFKKDAKSQEEK

Parental  QKQLTEKIRQQQEKLEALQKTTPIRSQADLKKLPLEVTTRPSTEEPARRPQRPRSPPLPAVIRNAPSRPP
          QK.LTEKIRQQQEKL.AL.K..PIRSQADLKKLPLEVTTRPSTEEPARRPQ.P.SPPLPAVIRNA.SRPP
Retrocopy QKRLTEKIRQQQEKLQALRKIKPIRSQADLKKLPLEVTTRPSTEEPARRPQHPWSPPLPAVIRNALSRPP

Parental  SMQTPRPASQPRKAHVISSTPKPPALAAREEAGTSRLLQPPEAPRKPVNTPVKTAPRPTLPMQPLSPSPL
          SMQ...PASQPRKAHVISSTPKPPALAAREEAGTSR..Q.PEAP.KP.NTPVKTA..P..P.Q.L.PSPL
Retrocopy SMQA--PASQPRKAHVISSTPKPPALAAREEAGTSRTFQLPEAPQKPMNTPVKTATWPIPPIQLLAPSPL

Parental  PNSKSSREVSASKVIKTPVVKKPEPPTKLPPAAPGRKRSLGVSDEEEAEEDTERRKEKYKRGKFAVKEEK
          PNSKSSRE..ASKVIK.P.VKKPEPPTKLP.A.PG.KRSLGV.DEEE.EE.TE.RKEK.KRG.FAVKEEK
Retrocopy PNSKSSRELPASKVIKIPAVKKPEPPTKLPTATPGQKRSLGVFDEEEGEEETEGRKEKCKRGQFAVKEEK

Parental  KDLNELSDSAGEEDSAELKMAQKDKGLHVEVRVNREWYTGRVTAVEVGKNVVRWKVKFDYVPTDTTPRDR
          K.L.ELSDSAGEEDSAE...A..D.GL.VEV.VN..WYTGRVTAVE.G..VVRW.VKFDYVPTD..PRDR
Retrocopy KALKELSDSAGEEDSAEVETAPQDEGLPVEVCVNGQWYTGRVTAVEGGQHVVRWQVKFDYVPTDPMPRDR

Parental  WVEKGSEDVRLMKPPSPEYQSPDTQQEGGEEEETRMAQQAVAMVEPCTSECIGIEPDTTAPNTSHETIDL
          WVEKGSEDVRLMKPPSPE.QSPDTQQ.GG.EEET..AQQA.AMVEPCTSE.I.IEPDTTAPNTSHETIDL
Retrocopy WVEKGSEDVRLMKPPSPENQSPDTQQAGGDEEETQVAQQAGAMVEPCTSESIRIEPDTTAPNTSHETIDL

Parental  LVQILRNCLRYFLPPSFPISKKELSVMNSDELISFPLKEYFKQYEVGLQNLCHSYQSRADSRAKASEESL
          LVQ.LRNCL.YFLP..FPISK.ELS.MNS.ELI.FPL.EYF.QY...LQNLC.SYQS.A.SRAKASE.SL
Retrocopy LVQMLRNCLQYFLPLGFPISKQELSAMNSEELIAFPLNEYFEQYKAELQNLCQSYQSPAESRAKASEASL

Parental  RTSERKLRETEEKLQRLRTNIVALLQKVQEDIDINTDDELDAYIEDLITKGD
          ..SE.KLRETEEKLQRLR.N..ALLQKVQ.DIDI.TDDELDAYI.DL.T.G.
Retrocopy HISEKKLRETEEKLQRLRSNVAALLQKVQQDIDISTDDELDAYIADLLTEGN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2044 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000006442	1 retrocopy	retro_cpor_17,
Monodelphis domestica	ENSMODG00000009557	1 retrocopy	retro_mdom_1757,
Mus musculus	ENSMUSG00000034543	1 retrocopy	retro_mmus_49,
Otolemur garnettii	ENSOGAG00000009971	2 retrocopies	retro_ogar_2044 , retro_ogar_282,
Rattus norvegicus	ENSRNOG00000019624	1 retrocopy	retro_rnor_412,