RetrogeneDB ID: retro_ogar_2062

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873587.1:1871336..1872043(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CAMLG
• Ensembl ID: ENSOGAG00000003580
• Aliases: None
• Description: calcium modulating ligand [Source:HGNC Symbol;Acc:1471]

Sequence

>retro_ogar_2062
GAAGAAAGTCAAACAAAATCAAAGCAACAGGAAAGTGATAAACTGAACTCCCTCAGCATTCCTTCAGTCTCAAAGCGAGT
AGTGCTGGGTGATTCTGTCTGTACTGGAACAACTGAGCAGCAGGGTGGTGTGGCTGAGGTAAAGGGGACCCAACTGGGAG
ACAAACTGGACTCTTTGATTAAATCATCTGAGTGCAGTAATGATGTCGACCTTGAGCTCCAGCAGCGGAACAGAGGGCAC
CTGACAACAGACACTGTCCAGAGATGTTCTCGCCATAGTCTAGAACAGTACCTTTCCAGATTTGAAGAAGCAATGAGCTA
AGGAAACAGCTGATTAGTGAAAAACCCAGTCAAGAGGATGGAAGTTCAACAGAAGAGTTTGAATCCTTTCGAATATTTAG
ATTGGTGGGATGTGCTCTTCTTGCTCTTGGAGTCAGAGCTTTTGTTGGCAAATACTGTTCAGATTTGCTCCATTTCTTAC
TTTACAACTTGCGTATGTGGGACTATACAAATATTTTCCTAAGGGTGAAAAGGAAGACAAGAGTACTAACAGCTGCACCT
CTGTTATCTGGAATTCCTGCTGAAGCAATAAATCAATCGATGGACATCCATAGCAAAATGGGTGAAGTCTTCACGGATCT
CTGTGTCTACTTTTTCAGTTTTATCTTTTGTCATGAACTGCTTAATTACTGGGGCTCTGAAGTACCA

Alignment

ORF - retro_ogar_2062 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.85 %
• Parental protein coverage: 80.68 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EESQTKSKQQDSDKLNSLSIPSVSKRVVLGDSVSTGTTEQQGGVAEVKGTQLGDKLDSLIKSSECSNDVN
          EESQTKSKQQ.SDKLNSLSIPSVSKRVVLGDSV.TGTTEQQGGVAEVKGTQLGDKLDSLIKSSECSNDV.
Retrocopy EESQTKSKQQESDKLNSLSIPSVSKRVVLGDSVCTGTTEQQGGVAEVKGTQLGDKLDSLIKSSECSNDVD

Parental  LELRQRNRGDLTTDTVQRSSRHGLEQYLSRFEEAM-KLRKQLISEKPSQEDGSSTEEFDSFRIFRLVGCA
          LEL.QRNRG.LTTDTVQR.SRH.LEQYLSRFEEAM..LRKQLISEKPSQEDGSSTEEF.SFRIFRLVGCA
Retrocopy LELQQRNRGHLTTDTVQRCSRHSLEQYLSRFEEAM<ELRKQLISEKPSQEDGSSTEEFESFRIFRLVGCA

Parental  LLALGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKGEKKVKTTVLTAALLLSGIPAEVINRSMDTYSKM
          LLALGVRAFV.KY.S....FL...L........F.....K..T.VLTAA.LLSGIPAE.IN.SMD..SKM
Retrocopy LLALGVRAFVGKYCSDLLHFLLYNLRMWDYTNIFLRVKRK--TRVLTAAPLLSGIPAEAINQSMDIHSKM

Parental  GEVFTDLCVYFFTFIFCHELLNYWGSEVP
          GEVFTDLCVYFF.FIFCHELLNYWGSEVP
Retrocopy GEVFTDLCVYFFSFIFCHELLNYWGSEVP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2062 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013676	1 retrocopy	retro_meug_1965,
Monodelphis domestica	ENSMODG00000014251	1 retrocopy	retro_mdom_758,
Otolemur garnettii	ENSOGAG00000003580	1 retrocopy	retro_ogar_2062 ,