RetrogeneDB ID: | retro_ogar_2087 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873589.1:6398188..6398498(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SDHD | ||
Ensembl ID: | ENSOGAG00000008568 | ||
Aliases: | None | ||
Description: | succinate dehydrogenase complex, subunit D, integral membrane protein [Source:HGNC Symbol;Acc:10683] |
Percent Identity: | 74.29 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAALCRLSVLCGAQGGRVLFLRTSVVRPAYVSAFLQDRPAPGWCGVQHIHLSPSHHSASKAASLHWTSER |
M..L..LS.LCGAQGG..LFLRT.VVRPA.VSAFLQD.P.PGWCG....HLSP..H...KAAS..WTSER | |
Retrocopy | MEVL*ILSILCGAQGGQALFLRTPVVRPA*VSAFLQD*PTPGWCGAERMHLSPIRHAGPKAASPPWTSER |
Parental | VVSVLLLGLLPAAYLN-PCSAMDYSLAAALTLHSH |
VVSVLLLGLLPA..LN.PCSAMD..LAAALTLHSH | |
Retrocopy | VVSVLLLGLLPASSLN>PCSAMD-PLAAALTLHSH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000010975 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000008424 | 1 retrocopy | |
Homo sapiens | ENSG00000204370 | 8 retrocopies | |
Gorilla gorilla | ENSGGOG00000026496 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002763 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015247 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008568 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000003876 | 5 retrocopies |