RetrogeneDB ID: retro_ogar_2105

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873591.1:5278295..5279180(+)
• Located in intron of: ENSOGAG00000011412

Retrocopy information

• Ensembl ID: ENSOGAG00000031441
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: KAT5
• Ensembl ID: ENSOGAG00000014123
• Aliases: None
• Description: K(lysine) acetyltransferase 5 [Source:HGNC Symbol;Acc:5275]

Sequence

>retro_ogar_2105
AGGCAGGTGAAGGGGAAAGCGGAGGTGGTGTCGCGGGCACGCTAGTGCCGCGGGGACAGCCGAGAGGCCCAGCCTCGCTT
TTTCCTCAAAATGGATCCGCCTGTCGAGCAGGGGCAGCTCTGTGAGGCACAGGAGCAAAAGTCAGACCACCCGGGCCCTG
ATAAGGACACCCAGGACAGCTCAGATGGAGCATCATCTGCGCCAAGCATGACTGGCAGCCTGGTGTCGAACTGGAACCAA
AGCATTGTCACCCAAATGAGGAACATTGAGTGCATCGAGCTGGGCCGGCACCGCCTCCAGCCGTGCTACTTCTCCCCGTA
CCCCGAGGAACTCACCACTTTGCCAGTCCTCTACCTGTGCGAGTTCTGCCTCAAGTACAGCCGTAGCCTCAAGTGTCTTC
AGCGTCACTTGGTTAAGTGCAACCTGCGACACCCCCCAGGCAATGAGATCTACCGCAAGGATACCATCTCCGTTTTCGAG
ATTGATGGACGTAAGAATAAGACTTACTCTGAGAATTTGTGTCTTTTGGCCAAGTGTTTCATCAACCACAAGACCTTGTA
CTATAACACAGACCCTTTCCTCTTCTATGTTATGACAGAGTACGACTGCAAAGGCTTCCACATTGTGGGCTACTTTTCCA
AGGAGAAGGAATCAGCAGAAGGCTATAACGTGGCCTGCATCCTGACCCTGCCTCCCTTTCAGAACCGGGGCTATGGCAAG
CTGCTGATTGAGTTCAGCTATGAACTCTCCAAATTAGAAGGGAAAACAGGGACCCCTGAGAAGCCTCTCTCAGAACTTGG
CCTCCTGTCCTATCAAAGCTACTGGTCCCAGACCATCGTGGATGTCCTGATGGGGGTGAAGTGGGAAGGCGGCAACAGGC
CACAG

Alignment

ORF - retro_ogar_2105 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.85 %
• Parental protein coverage: 57.31 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  RSTKRKVEVVSPA-TPVP--SETAPASVFPQNGSARRAVAAQPG-RKRKSNCLGTDEDSQDSSDGIPSAP
          R..K.K.EVVS.A.T.VP......PAS.FPQNGSA.RA.AA..G....KS...G.D.D.QDSSDG..SAP
Retrocopy RQVKGKAEVVSRA<TLVPRGQPRGPASLFPQNGSACRAGAAL*G>QEQKSDHPGPDKDTQDSSDGASSAP

Parental  RMTGSLVSDRSHDDIVTRMKNIECIELGRHRLKPWYFSPYPQELTTLPVLYLCEFCLKYGRSLKCLQRHL
          .MTGSLVS......IVT.M.NIECIELGRHRL.P.YFSPYP.ELTTLPVLYLCEFCLKY.RSLKCLQRHL
Retrocopy SMTGSLVSNWNQS-IVTQMRNIECIELGRHRLQPCYFSPYPEELTTLPVLYLCEFCLKYSRSLKCLQRHL

Parental  TKCDLRHPPGNEIYRKGTISFFEIDGRKNKSYSQNLCLLAKCFLDHKTLYYDTDPFLFYVMTEYDCKGFH
          .KC.LRHPPGNEIYRK.TIS.FEIDGRKNK.YS.NLCLLAKCF..HKTLYY.TDPFLFYVMTEYDCKGFH
Retrocopy VKCNLRHPPGNEIYRKDTISVFEIDGRKNKTYSENLCLLAKCFINHKTLYYNTDPFLFYVMTEYDCKGFH

Parental  IVGYFSKEKESTEDYNVACILTLPPYQRRGYGKLLIEFSYELSKVEGKTGTPEKPLSDLGLLSYRSYWSQ
          IVGYFSKEKES.E.YNVACILTLPP.Q.RGYGKLLIEFSYELSK.EGKTGTPEKPLS.LGLLSY.SYWSQ
Retrocopy IVGYFSKEKESAEGYNVACILTLPPFQNRGYGKLLIEFSYELSKLEGKTGTPEKPLSELGLLSYQSYWSQ

Parental  TILEILMGLKSESGERPQ
          TI...LMG.K.E.G.RPQ
Retrocopy TIVDVLMGVKWEGGNRPQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2105 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000014123	2 retrocopies	retro_ogar_2105 , retro_ogar_2107,