RetrogeneDB ID: | retro_ogar_2151 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873596.1:6945780..6946436(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSOGAG00000031071 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | GID4 | ||
| Ensembl ID: | ENSOGAG00000025722 | ||
| Aliases: | None | ||
| Description: | GID complex subunit 4, VID24 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28453] |
Retrocopy-Parental alignment summary:
>retro_ogar_2151
ATGCTGGTCCATACTGACTGTCCCCCGCCAACTGGGGCCTTGGCTGCCTCCGTGGCTTCACTCATCCCACCACCACCCAT
CAACACCCAGCAGCCGGCCCTGGCCACCAGCTTGCCCCACAGCAGCTCCAAGTTCTGTGGCCACCAGAAGAGCAAGGGGA
ACTGGTACGACGTAGAGGTGGTGCTGCAGCATGTGGACACAGGGAACTCCTGCCTTTGTGGGTCCCTGAAGATTAAAGGC
CTTACAGGGGAGTACCCAACACTTACAACCTTCTTTGAAGGACAAATAATCAGCAAAAACACCCTTTCTTCACTCAAAAG
TGGGATGCAGATGAAGTTGATCGGAATCACCAGAGAAAGTTGCTGGCTTTTGATCAGTATGCAAAATCGTTTAACTCACG
TGACTTCTGAGTTTGAAGACTATGAAGAGCTGAAGAACAGGGACTATGTCTTCATGAGGTGGAAGGAGCAGTTCCTGGTT
CCAGATCGCACAATCAAAGACATCAGTGGCACTTCCTTTGCTGGGTTCTACCACATCTGCTTTCAGAAGTCAGCAGCCTC
CATGGAGGGCAACACTGTCATAGGAGTTCAGGATGGTATCAATCTCTCAATCTAACCCATGTCCCTGAACGCAGCACACC
TATCTATGAATTCCAG
ORF - retro_ogar_2151 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 78.92 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | MPVRTECPPPAGASAASAASLIPPPPINTQQPGVATSLLYSGSKFRGHQKSKGNSYDVEVVLQHVDTGNS |
| M.V.T.CPPP.GA.AAS.ASLIPPPPINTQQP..ATSL..S.SKF.GHQKSKGN.YDVEVVLQHVDTGNS | |
| Retrocopy | MLVHTDCPPPTGALAASVASLIPPPPINTQQPALATSLPHSSSKFCGHQKSKGNWYDVEVVLQHVDTGNS |
| Parental | YLCGYLKIKGLTEEYPTLTTFFEGEIISK-KHPFLTRKWDADEDVDRKHWGKFLAFYQYAKSFNSDDF-D |
| .LCG.LKIKGLT.EYPTLTTFFEG.IISK.KHPF.T.KWDADE.VDR.H..K.LAF.QYAKSFNS.DF.. | |
| Retrocopy | CLCGSLKIKGLTGEYPTLTTFFEGQIISK<KHPFFTQKWDADE-VDRNHQRKLLAFDQYAKSFNSRDF>E |
| Parental | YEE---LKNGDYVFMRWKEQFLVPDHTIKDISGASFAGFYYICFQKSAASIE-GYYYHRSSEWYQSLNLT |
| .E....LKN.DYVFMRWKEQFLVPD.TIKDISG.SFAGFY.ICFQKSAAS.E.G...HRSS.WYQSLNLT | |
| Retrocopy | FEDYEELKNRDYVFMRWKEQFLVPDRTIKDISGTSFAGFYHICFQKSAASME<GQHCHRSSGWYQSLNLT |
| Parental | HVPEHSAPIYEFR |
| HVPE.S.PIYEF. | |
| Retrocopy | HVPERSTPIYEFQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2151 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000025722 | 1 retrocopy |
retro_ogar_2151 ,
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