RetrogeneDB ID:

retro_ogar_216

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873539.1:13414120..13416655(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000028921
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000008747
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_216
GAAATGTTCTTATGTTATAATGGGGAAGTCCTTGTTTTCCAGTTATCGGAAGGAAATTTTTCGGATAAAGAGACTGCGAA
AACACCCATATTACTTATCAGAAGAATGGTATTTGACAGAGAAACAAGATCATTTGTTCAGAAGTCCACTGGATCCTTCA
GCATTGAGGTAGAAAACTCTCATTTTAAAATTATTTGTTGCAATTGTGTGTCAGATTTCAGAACTGGAATTAACCTCCCT
TGCGTGTTGATACAAAGCAATGAAAAGAACGTTTTCAGGTATTTTCTACTACTTCTCCACAGTACCAATAAATTTGAAAA
GCGTTTGAGCTTTAATATAGGTCATGAGTTGAAGGATGGCTTAAGGGTCCTTGATGGCCCTTTGGTCTTATGGAGACATG
CCGGAACATTCTTCTGTATGTCTTCTGAAACTGGCAAAGCCATTACTCTGTCAGTTAACTTTTCCTCCATTGAATGGATA
GGGGAGATTAAAAATGTGGGTATGATTTTATTGGGAATAAAGGGATGTTATTTCTCTGAGAAAGGACGTACCCAGGAGGC
TTCAGAATCAGATTATGCAGTTTGGAATACCAAGTTTTGTGCATACTCTCTTGAAAGTCAAAAAGTATTAAGTGATACGT
TCATTATCCCTCCTGCTTATAGTAATTTGGTAACTTGCGTGCATGTCTGTGCAAGTGAGATTATCAACGGCCAGTTAAGA
ATATCTCTAATTGCCCTTACTCAAAAGAATCAACTGATTTCCTTCCAAAATGGGACTCCTAAAAGTATATGCCAGCTTCC
ATTTGGAGATCCTTGTGCAGTTCACCTTATGGATTCAGGTGGAGGAAACTTTTATTTCATTGTATCCTTTAGGTCCAATG
ATGCTTGTGCTGTTTGGGAAAAGAACTTTCAGGTTGCTGCTAAATGGGAAAAAATTAGCTTAATTCTGATAGATGACTTT
ATTGGAACTGGAACTGAACAAGTATTGGTACTTTTTAAAGACTCCTTGAATTCAGATTGCCTGACTTCATTTCAAATGAC
AAATTTTGAAAGTATAAACTATTCAAGTGAACCATTGGATTGCACTGAAGATGATTTATTTGAAGACAAACAAGACAATC
GTTATTTGGTGATTCCACCTCTGGAAAGAAGAATAAAAGTTGGTGCAGCTTCTGTTCAGGAATTACAACAACACATCTTG
TTGAAGGATAAAATTATTTTGAAATCTTACAAAGCTTTAATAAACCTGCTTCAAGGGAAAGATGATAATACATCAAGTGT
AAGGGAGGAATGTCTTGCTCCCCTTTGTGGTGAAGAAGAAAATTCTGAATATACCTTTGATGAAAAGTTGCCAGACAATT
TTCAAGATTCAAAGCAACTAGTAGAGAAGATCTGGTATCGTGTAATAGATGATAGCTTAGTTGTTGGAGTGAAAACCTCA
TCTTCTTTAGAGCTGTCCCTGAATGATGTGACTTTATCATTATTAATGAATCAAGCCCATGGCTCCAGCTATCACCTTAT
TAAGTGTCAAAATAGGGTGATTAAGTTAAGTATGGATTCTTTGCCAGAACCACACTTGATGCCATACAAAATAGGATCAG
AGGCAAAAAAAATCAAGTTGACCCTTGATAATGAGGAAAAGGAAATCTTTGTTCGTGAACAGTCATCACAACGAGAATAT
GTGCCGATAATTACTGCTATAACATCTCTTTCACCACTTTTAGCACTCAGTAAATTTTGTTGCATTGTGCTGCTACATAT
TATGAAGAGAGAAAATGGTGACTATCCTCAAGATCATTATATTCCGTGTGGCAGACTTTTTGTAAGTCTAGATCTTTCAA
GTGAGAAATGCCTGCTGATGTTTCCAAAGAAGAAACCTGTAGAACACAAGGAGGATCTTTTTGCACTTTTCGCAGTATTC
CACAAATCTTGTTTTCAAATCACATCACCTGGATATGCCCTGAAGGCAATGAAGGCATGGCTGTTAGAATGCATGAATTG
TGAAGTCATCAAAGAATTTCCAGAAGTGTGCTTTTGTAAAAGGCCAGGAAATTTGTATGGGACACTCTTCAAATGGAAAC
AAAGAACACTATTTGAAGGGATTTTAATAATCTATTCCAGGAATCAAACAGTTTTGTTCCAGTGCCTTCATAAGCTCATT
GGTGTTCTCCCTATAAACTGTTTGTTGAGAAATCTAAAATTAGAAAATGAAGATTTCCTAGTTGATTATATGGCATTGTC
TTTGGAGAAGGAACTGGTTATCTTTGGCTCTCTTTCTTCTGCCTTAGCTAAAGTTGATAGCAACTTTATGCAGAGGTGTG
AAGCAAGCAAAGGAGATAGTAGTGTTCTTGCAGATGCTTTACCAGACAGAGAGAAGGAAATTCATTGGTACAGAAAAGAA
GTCCAGAGAGCAAAGAAGAAAATGTTGAGAACAAAGCTAAAAGTGAGTGGTGCCCTTTATAGAGCACTAGCTTTGAAAGT
AGCTGAGGTTCAGTTGAAATCAGACCTCACTGCCCAGAAATTGACCAATTTATAA

ORF - retro_ogar_216 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.52 %
Parental protein coverage: 99.18 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalESFLCYNGEVLVFQLSKGNFSDKETAKTSMLHVRRMVFDRETRSFIQKSTGSFSIKGENSHFKIIYCNCV
E.FLCYNGEVLVFQLS.GNFSDKETAKT..L..RRMVFDRETRSF.QKSTGSFSI..ENSHFKII.CNCV
RetrocopyEMFLCYNGEVLVFQLSEGNFSDKETAKTPILLIRRMVFDRETRSFVQKSTGSFSIEVENSHFKIICCNCV
ParentalSDFRTGINLPCVLIQSNENKVFRYFLLFLHSTNKFENRLSFKIGHELKDSLRVLDGPLVLWRHARTFFYM
SDFRTGINLPCVLIQSNE..VFRYFLL.LHSTNKFE.RLSF.IGHELKD.LRVLDGPLVLWRHA.TFF.M
RetrocopySDFRTGINLPCVLIQSNEKNVFRYFLLLLHSTNKFEKRLSFNIGHELKDGLRVLDGPLVLWRHAGTFFCM
ParentalSSETGKVVTLSVNFSSIVWIGDIENVGMVLLGIKERSLSEEECTQEASESDYIISNTKFCVYSLESEEVL
SSETGK..TLSVNFSSI.WIG.I.NVGM.LLGIK....SE...TQEASESDY...NTKFC.YSLES..VL
RetrocopySSETGKAITLSVNFSSIEWIGEIKNVGMILLGIKGCYFSEKGRTQEASESDYAVWNTKFCAYSLESQKVL
ParentalSDTYIIPPAYSSVVTCVHVCAIEIINNQLRMSLIALTQKNQLIYFHNGTPESVCQLPFGDPCAVHLMDLS
SDT.IIPPAYS..VTCVHVCA.EIIN.QLR.SLIALTQKNQLI.F.NGTP.S.CQLPFGDPCAVHLMD..
RetrocopySDTFIIPPAYSNLVTCVHVCASEIINGQLRISLIALTQKNQLISFQNGTPKSICQLPFGDPCAVHLMDSG
ParentalGGNFFFIVSFRSNDVCAVWEKNFQVAAKWEKISLVLIDDFIGTGTEQVLLLFKDSLNSDCLTSFQITNLE
GGNF.FIVSFRSND.CAVWEKNFQVAAKWEKISL.LIDDFIGTGTEQVL.LFKDSLNSDCLTSFQ.TN.E
RetrocopyGGNFYFIVSFRSNDACAVWEKNFQVAAKWEKISLILIDDFIGTGTEQVLVLFKDSLNSDCLTSFQMTNFE
ParentalNINYSSEPLDCSEDDLFEGKQDNRHLVIPPLESRIKVGVASVQRLQQHILLKDKIILQSYKALINLLQGR
.INYSSEPLDC.EDDLFE.KQDNR.LVIPPLE.RIKVG.ASVQ.LQQHILLKDKIIL.SYKALINLLQG.
RetrocopySINYSSEPLDCTEDDLFEDKQDNRYLVIPPLERRIKVGAASVQELQQHILLKDKIILKSYKALINLLQGK
ParentalDDNTSSVKEKESLALLCGEEENSVNTFDEKLPDSFQDSKQLVEKIWYRVIDDSLVVGVKTTSSLELSLND
DDNTSSV.E.E.LA.LCGEEENS..TFDEKLPD.FQDSKQLVEKIWYRVIDDSLVVGVKT.SSLELSLND
RetrocopyDDNTSSVRE-ECLAPLCGEEENSEYTFDEKLPDNFQDSKQLVEKIWYRVIDDSLVVGVKTSSSLELSLND
ParentalATLSLLMDQAHGSSSQLIKCQSSVIKLSMDSLPEPHLTPDEIGSEAKKIKLILDSEEKESFLCEQPSKKE
.TLSLLM.QAHGSS..LIKCQ..VIKLSMDSLPEPHL.P..IGSEAKKIKL.LD.EEKE.F..EQ.S..E
RetrocopyVTLSLLMNQAHGSSYHLIKCQNRVIKLSMDSLPEPHLMPYKIGSEAKKIKLTLDNEEKEIFVREQSSQRE
ParentalCVQIITAVTSLSPLLAFSKFCCIVLLHIMERENDDCPQDDYIQCGRLFIRLEDLSSGKCLLTFPKKKPIE
.V.IITA.TSLSPLLA.SKFCCIVLLHIM.REN.D.PQD.YI.CGRLF..L.DLSS.KCLL.FPKKKP.E
RetrocopyYVPIITAITSLSPLLALSKFCCIVLLHIMKRENGDYPQDHYIPCGRLFVSL-DLSSEKCLLMFPKKKPVE
ParentalHQEDLFALFAAFHKSCFQIISPGYALKAMKVWLLERMKCEVIKEFPEVCFCKRPENFYGTLFKWQQRTLF
H.EDLFALFA.FHKSCFQI.SPGYALKAMK.WLLE.M.CEVIKEFPEVCFCKRP.N.YGTLFKW.QRTLF
RetrocopyHKEDLFALFAVFHKSCFQITSPGYALKAMKAWLLECMNCEVIKEFPEVCFCKRPGNLYGTLFKWKQRTLF
ParentalEGILIIYSRNQTVLFQCLHKLISVLPTDCLLRNLKLENEDFLIDYMALSLEKELNILGSLSSSLAKVDSI
EGILIIYSRNQTVLFQCLHKLI.VLP..CLLRNLKLENEDFL.DYMALSLEKEL.I.GSLSS.LAKVDS.
RetrocopyEGILIIYSRNQTVLFQCLHKLIGVLPINCLLRNLKLENEDFLVDYMALSLEKELVIFGSLSSALAKVDSN
ParentalYMPRCEATKGKSSVVA-ALPDREKEIRWYRKEVQRAKKKTLRTKLKVSGALYRALTLKVAEVQLKSDLTA
.M.RCEA.KG.SSV.A.ALPDREKEI.WYRKEVQRAKKK.LRTKLKVSGALYRAL.LKVAEVQLKSDLTA
RetrocopyFMQRCEASKGDSSVLADALPDREKEIHWYRKEVQRAKKKMLRTKLKVSGALYRALALKVAEVQLKSDLTA
ParentalEKLTNL
.KLTNL
RetrocopyQKLTNL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_216 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Otolemur garnettii ENSOGAG00000008747 1 retrocopy
retro_ogar_216 ,
Pteropus vampyrus ENSPVAG000000008271 retrocopy
retro_pvam_1125,


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