RetrogeneDB ID: | retro_ogar_2185 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873600.1:683477..684427(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | PHACTR4 | ||
| Ensembl ID: | ENSOGAG00000015245 | ||
| Aliases: | None | ||
| Description: | phosphatase and actin regulator 4 [Source:HGNC Symbol;Acc:25793] |
Retrocopy-Parental alignment summary:
>retro_ogar_2185
ATTGCTGAACTGTCCCAAGCAATAAACAGTGGTGTATTGTGATTAAAACCATCCCACCCTTACCACCTAAGAGAGGCATT
CTGTCAACCTCAGTACCCACCATGGAGCCTGCTGCTGCCATCATCACAAAACACCAAATGTTCAAAGAGAGAAGAGCACG
TACTCTGTGGGCTCTGAACCACTAATGATGGTCCACCTCCCTCTCCATCCCCCCCCACTGCCTGCTCATATACCTCCAGA
GCCTCCACGTTCCCCTCTATTCCCTGCTAAGACTCTTGCAGTTATGCCAGAAATTGAGTTTGTAGCATCCGTAGATTTAC
CCCAAGAGGTTTCCCAGCAAGAATATCGGAAGAGGAAAGTCCCAAAGAGGATATTGGACCAGAGCTCTGGGGAGCCCCAG
GTAACTTCTAGACTGCCCCCACTCCCACTGCATGTTCAAACCCAGCAGGCCCTGACCAGCCCACTTCCCATGACTCCTCC
ATTGGAGGACCTCACAGAGCTCATTCATTGCTCTTTGAGAACAACAACTTTTATGAGGACAGCATTACTCTGGGTTGGAC
CAGGTCACTTCTTATCACTACTGAAATGGTGAAATTCCAGAGGATGAAGATGGAGAGCAGATCTGCCCACCTGCATTCAG
TGAAGATGTGATGCCTGTCTCAGTCACCTCCAAACTACCACAGTGTCTGCAAGAGGAAGACGAGGAGAAGGAGAGTGACT
GATTCTGAGCGGCCCACTCAGTACCGAGATGAAGAGGATGAAGATGAGAGCTGACAGAGTGCTCTGGCCAACAAAGTGAA
AAGGAAAGACACACTGGCAATGAAGTTGAACCACAGACCCAGTGAACCAGAAATGAACTTGAATACTTGACCTCCTAAAA
GAAGGAGTGGAATTAAGTTCAGCACCAGATTGGGAATACGGTGATCCAGTGACAGTCAAAGACCAACACC
ORF - retro_ogar_2185 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 73.56 % |
| Parental protein coverage: | 75.35 % |
| Number of stop codons detected: | 5 |
| Number of frameshifts detected: | 8 |
Retrocopy - Parental Gene Alignment:
| Parental | LAELSQAINSGTLLSKPS-PPLPPKRGIPSTLVPTVEPAPVITTK-TPSDQREKSTYSVGSEPLMII-PP |
| .AELSQAINSG.L..KPS.PPLPPKRGI.ST.VPT.EPA..I.TK.TP..QREKSTYSVGSEPLM...PP | |
| Retrocopy | IAELSQAINSGVL*LKPS<PPLPPKRGILSTSVPTMEPAAAIITK<TPNVQREKSTYSVGSEPLMMV<PP |
| Parental | PSPSPP-LPTHIPPEPPRSPPFPAKTFVVVPEIEFIPCLDLSQEVSQQEDQKKEVPKRILDQSFGEPHVP |
| PSP....LP.HIPPEPPRSP.FPAKT..V.PEIEF....DL.QEVSQQE..K..VPKRILDQS.GEP.V. | |
| Retrocopy | PSPXXX>LPAHIPPEPPRSPLFPAKTLAVMPEIEFVASVDLPQEVSQQEYRKRKVPKRILDQSSGEPQVT |
| Parental | SRLPPLPLHIRIQQALTSPLPMTPPLE-GSHRAHSLLFENSDNFCEDSVTLGRTRSLPITIEMLK-VPDD |
| SRLPPLPLH...QQALTSPLPMTPPLE.G.HRAHSLLFEN..NF.EDS.TLG.TRSL.IT.EM.K..P.D | |
| Retrocopy | SRLPPLPLHVQTQQALTSPLPMTPPLE<GPHRAHSLLFENN-NFYEDSITLGWTRSLLITTEMVK<IPED |
| Parental | EEEEQICPPAFSEDVMSTSVISKLPQCLQEEEEEKESD-SDSEGPIQYRDEEDEDESHQSALANKVKRKD |
| E..EQICPPAFSEDVM..SV.SKLPQCLQEE..E......DSE.P.QYRDEEDEDES.QSALANKVKRKD | |
| Retrocopy | EDGEQICPPAFSEDVMPVSVTSKLPQCLQEE-DEEKES>TDSERPTQYRDEEDEDES*QSALANKVKRKD |
| Parental | TLAMKLNHRPSEPELNLNIWPHK-SKEEWNEIRHQIGNTLIRRLSQRPT |
| TLAMKLNHRPSEPE.NLN..P.K..KE.WN...HQIGNT.I...S...T | |
| Retrocopy | TLAMKLNHRPSEPEMNLNT*PPK<KKE-WN*VQHQIGNTVIQ*QSKTNT |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2185 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000015245 | 1 retrocopy |
retro_ogar_2185 ,
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