>retro_ogar_2211
AAAGGTGGTGCAGGAGGTAAAGGTGTTTGGGCTACACCTGGGCAGGTGTATGATGTAGAGGACGTAGATGCGAAAGATCT
GAACTATGATGATGACCAGGAGAACTGTGTTTATGAAACTGTAGTTTTGCCTTTGGATGAAAGAACATTTGAGAAGACTT
TAACACCAATCATGCAGGAATATTTTGAGCATGGAGATACTAATGAAGTTGCAGAAATCCTGAGAGATTTAAATCTTGGT
GAAATGAAAAGCGGACTACCAGTGTTGGCAGTGTCCTTAGCATGGGAGGGGAAGGCTAGTCATAGAGAAATGACATCTCA
GCTTCTTTCTGACCTTTGTGGGACAGTAATGAGCACAAATGATGTGGAAAAATCATTTGATAAATTGTTGAAAGATCTAC
CTGAGTTGGCATTGGGTACTCCTAGAGCACCACAGCTGGTGGGCCAGTTTATTGCTTTGAGCTGTTGGAGATGGAATTTT
ATGTAACACCTATATCGATAGTTACAAGGGAACAGTAGACTGTGTACAGGCTAGAGCTGCTCTGGATAAAGCTACCGTGC
TCCTGAGTATGGCTAAAGGTGGAAAGCGTAAAGATAGTGTATGGGGCTCTGGAGGCGGGCAGCAACCTGTCAATCACCTT
GTTAAAGAGATTGATGTGCTGTTGAAAGAGAATTTACTGTCTGGAGACATACCTGAAGCTGAACATTGCCTTACGGAACT
GGAAGTACCTCATTTTCACCATGAGCTTGTATATGAAGCTATTGTAATGGTTTTAGAGTCAACTGGAGAAAATACATTTA
AGGTGATTTTGGATTTATTAAAATCCCTTTGGAAGTCTTCTACCATTACTGTAGACCAAATGAAAAGAGGTTATGAGAGA
ATTTATAATGAAATTCCAGACATTAATCTGGATGTCCCACATTCATACTCTGTGCTTGAGCGATTTGTAGAAGAATGTTT
T
ORF - retro_ogar_2211 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
94.7 % |
Parental protein coverage: |
68.23 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | KGGAGGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEV |
| KGGAGGKGVW.TPGQVYDVE.VD.KD.NYDDDQENCVYETVVLPLDER.FEKTLTPI.QEYFEHGDTNEV |
Retrocopy | KGGAGGKGVWATPGQVYDVEDVDAKDLNYDDDQENCVYETVVLPLDERTFEKTLTPIMQEYFEHGDTNEV |
|
Parental | AEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLLKDLPELALDT |
| AE.LRDLNLGEMKSG.PVLAVSLA.EGKASHREMTS.LLSDLCGTVMSTNDVEKSFDKLLKDLPELAL.T |
Retrocopy | AEILRDLNLGEMKSGLPVLAVSLAWEGKASHREMTSQLLSDLCGTVMSTNDVEKSFDKLLKDLPELALGT |
|
Parental | PRAPQLVGQFIAR-AVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQP |
| PRAPQLVGQFIA..AVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSM.KGGKRKDSVWGSGGGQQP |
Retrocopy | PRAPQLVGQFIAL>AVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMAKGGKRKDSVWGSGGGQQP |
|
Parental | VNHLVKEIDMLLKEYLLSGDIPEAEHCLKELEVPHFHHELVYEAIVMVLESTGENTFKVILDLLKSLWKS |
| VNHLVKEID.LLKE.LLSGDIPEAEHCL.ELEVPHFHHELVYEAIVMVLESTGENTFKVILDLLKSLWKS |
Retrocopy | VNHLVKEIDVLLKENLLSGDIPEAEHCLTELEVPHFHHELVYEAIVMVLESTGENTFKVILDLLKSLWKS |
|
Parental | STITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECF |
| STITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECF |
Retrocopy | STITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2211 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.