RetrogeneDB ID: retro_ogar_223

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873590.1:2911653..2912064(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000026254
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000033519
• Aliases: None
• Description: None

Sequence

>retro_ogar_223
ATGGCTGCCAGGCGCCTCTTCAGTGCTACCTGCACGTGGGCCAGCTGGGGGGCTCGGACACTTCTAGGCCCTGCCGCTCC
TGGAAGACTCCTGATCCGAGATTATGCCAAGAAACCAGTCATGAAAGGAGGCAGAGGGGGTAAAGGTGGTGTAGCCAGTG
AGAGCCTGAAGGACCCTGATGTGTGCACGGACCCTGTCCGGCTCACCTCGTATGCAATGGGCGTCAACATCTACAAGGAA
GGCCAAGATGTGGCCCTGAAGCCAGACGCAGAATACCCCGAGTGGCTATTCCAGATGAACCTGGGGCCCCCCAAAAAGCT
AGAGGAGCTGGATCCTGAGACACGGGAGTATTGGCGGCTGCTGCGAAAACAAAACATCTGGCGCCACAATCGCCTGAGTA
AGAACAAGAAG

Alignment

ORF - retro_ogar_223 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.81 %
• Parental protein coverage: 99.28 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAARRLFGATCTWAGWGARTLLGPAAPGKLLIRDYAKKPVMKGGRGGKGGVASESLKDPDVCTDPVRLTS
          MAARRLF.ATCTWA.WGARTLLGPAAPG.LLIRDYAKKPVMKGGRGGKGGVASESLKDPDVCTDPVRLTS
Retrocopy MAARRLFSATCTWASWGARTLLGPAAPGRLLIRDYAKKPVMKGGRGGKGGVASESLKDPDVCTDPVRLTS

Parental  YAMGVNIYKEGQDVALKPDAEYPEWLFQMNLGPPKKLEELDPETREYWRLLRKQNIWRHNRLSKNKK
          YAMGVNIYKEGQDVALKPDAEYPEWLFQMNLGPPKKLEELDPETREYWRLLRKQNIWRHNRLSKNKK
Retrocopy YAMGVNIYKEGQDVALKPDAEYPEWLFQMNLGPPKKLEELDPETREYWRLLRKQNIWRHNRLSKNKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_223 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000033519	1 retrocopy	retro_ogar_223 ,
Pteropus vampyrus	ENSPVAG00000007137	1 retrocopy	retro_pvam_139,
Rattus norvegicus	ENSRNOG00000020464	1 retrocopy	retro_rnor_1636,
Tupaia belangeri	ENSTBEG00000004745	1 retrocopy	retro_tbel_965,