>retro_ogar_2297
TACAGCAGCGGGCTGCTGGTGACATCAACCGCTGACCTGCAGCTGATAGACTTCGAGGGAAAAAAAGATGTGACCCAGAT
ATTTAACAACATCCTGAGAAGACAGACAGGCACTCAGAGTCCCACTGTGGAGGACATCAGCGCTCACCCCCACATCCTGT
TCATGCTCTTCAAGGGATAGGAAGCCCCACAGATTGCCTCGTGTTGTTGGATTATTCAGAGAGAATGCATTCGACATGAA
CCACTTGCCAAAATCATCCTCTTTTCTAACCAATTCAGAGATTTCTCTAAGTATGTGGAGATGTCAACATTTGATACTGC
TTTAGGTGCCTTTGCTACTTTTAAGGATTTACTAACCAGACATAAAGTGTTCGTAGCAGACTTCTTACAACAAAATTATG
ACACTATCTTTGAAGATTATGAGAAATTGCTTCAGTCTGGGAACTACGTGACTAAGAGACGATCTTTAAAGCTGCGAGGT
GAACTGATCCTCGACTGCCACAACTTTGCCATCATGACCAAGTACATCAGCAAGCCAGAGAACCTGAAGCTGATGATGAA
CCTCCTATGGGACAAGAGTCCCAATGCCCAGTTTGAAGCCTTTCACGTTTTTAATGTGTTTGTGTCCAGTCCTCACAAGA
CCCCACGTATTGTGGAAATTCTGTTAAAAAATCAGCCCAAACTCATTGAGTTTCTGAGCAGCTTCCAAAAAGAAAGGATG
GATAACAAGCAGTTCACTGACAAGAAGAACTGCTTGATTAAACAGATAAGGGACTTGAAGGAA
ORF - retro_ogar_2297 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.82 % |
Parental protein coverage: |
77.91 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | YSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGARSPTVEYISAHPHILFMLLKGYEAPQIALRCG |
| YSSGLLVT..ADLQLIDFEGKKDVTQIFNNILRRQ.G..SPTVE.ISAHPHILFML.KG.EAPQIA..C. |
Retrocopy | YSSGLLVTSTADLQLIDFEGKKDVTQIFNNILRRQTGTQSPTVEDISAHPHILFMLFKG*EAPQIASCCW |
|
Parental | IMLRECIRHEPLAKIILFSNQFRDFFKYVEMSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDAIFEDY |
| I..RECIRHEPLAKIILFSNQFRDF.KYVEMSTFD.A..AFATFKDLLTRHKV.VADFL.QNYD.IFEDY |
Retrocopy | IIQRECIRHEPLAKIILFSNQFRDFSKYVEMSTFDTALGAFATFKDLLTRHKVFVADFLQQNYDTIFEDY |
|
Parental | EKLLQSENYVTKRQSLKLLGELILDRHNFAVMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVAS |
| EKLLQS.NYVTKR.SLKL.GELILD.HNFA.MTKYISKPENLKLMMNLL.DKSPN.QFEAFHVF.VFV.S |
Retrocopy | EKLLQSGNYVTKRRSLKLRGELILDCHNFAIMTKYISKPENLKLMMNLLWDKSPNAQFEAFHVFNVFVSS |
|
Parental | PHKTPPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKK |
| PHKTP.IVEILLKNQPKLIEFLSSFQKER.D..QF.D.KN.LIKQIRDLK. |
Retrocopy | PHKTPRIVEILLKNQPKLIEFLSSFQKERMDNKQFTDKKNCLIKQIRDLKE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2297 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.