RetrogeneDB ID: retro_ogar_2451

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873624.1:6022597..6022904(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FXYD6-FXYD2
• Ensembl ID: ENSOGAG00000015394
• Aliases: None
• Description: FXYD6-FXYD2 readthrough [Source:HGNC Symbol;Acc:39978]

Sequence

>retro_ogar_2451
ATGGAGGTGGTACTGATTTTTCTGTGCAGCCTGCTGGCCCCCATGGTCCTGGCCAGTGCAGCTGAGCAGGAGAATGAAAT
GGACCCTTTTCATTATGACTAGCAGACGCTGAGGATTGGCGGATTGGCATTTGCTGTGGTCCTCTTTTCAGTTGGGATTC
TCCTTATCCTGAGTCGCAGGTGCATGTGGAATTTCAATCAGAAGCCCCAGTGGAGAACCTCATTACTGCAGATGCAACAG
AGCCCCAGAAAGCAGAGAACTGAAGTGCTGCCTTCAGTGGAAAGCCTCCCGGAACCTGAAGGCAGCT

Alignment

ORF - retro_ogar_2451 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.64 %
• Parental protein coverage: 99.02 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MEVVLIFLCSLLAPMVLASA-EQENEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCSFNQKPR
          MEVVLIFLCSLLAPMVLASA.EQENEMDPFHYD.QTLRIGGL.FAVVLFSVGILLILSRRC...FNQKP.
Retrocopy MEVVLIFLCSLLAPMVLASAAEQENEMDPFHYD*QTLRIGGLAFAVVLFSVGILLILSRRCMWNFNQKPQ

Parental  APGDEEAPQQSPRKRRTEVQPSGGKV-RNLKAA
          ........QQSPRK.RTEV.PS.....RNLKAA
Retrocopy WRTSLLQMQQSPRKQRTEVLPSVESL>RNLKAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2451 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000013044	1 retrocopy	retro_cjac_2098,
Erinaceus europaeus	ENSEEUG00000011989	1 retrocopy	retro_eeur_382,
Homo sapiens	ENSG00000137726	2 retrocopies	retro_hsap_562, retro_hsap_662,
Gorilla gorilla	ENSGGOG00000006473	2 retrocopies	retro_ggor_507, retro_ggor_574,
Otolemur garnettii	ENSOGAG00000014401	1 retrocopy	retro_ogar_247,
Otolemur garnettii	ENSOGAG00000015394	2 retrocopies	retro_ogar_2451 , retro_ogar_3061,
Pongo abelii	ENSPPYG00000003918	3 retrocopies	retro_pabe_583, retro_pabe_644, retro_pabe_648,