RetrogeneDB ID: retro_ogar_2480

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873627.1:490208..490577(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EFCAB10
• Ensembl ID: ENSOGAG00000000454
• Aliases: None
• Description: EF-hand calcium binding domain 10 [Source:HGNC Symbol;Acc:34531]

Sequence

>retro_ogar_2480
GAGAGCCAAACCCGGCAGGATTTGGAAAAGCATCAGATCCCAGAGCTGCTGAACTATCTCACCAGCGTCCTTCTCTTTTT
CTGGCCTGAAAAAAACAAGAGAGTATTTAATATCTCTATTGGAACGTCTAAGAATTGCCAAAATCACAGGTGGAGCTTTT
CTTGTGTTTACAGATAACTCCAACATCATAGCTATGTTTGCGATGATGGACCCTCCAAAAGAGGCACCATATCATTTGTG
TAATGTAAAGAGGCTCTTCAAACGCTGGGTCTGTGTACTGCAAATGAAGATTTAAAAGATGATGGCCATGGAATAAGTTA
GGATGAATTATTCCAAACTTAGGAAGTGAACAAGAGGACTCAGGAAATA

Alignment

ORF - retro_ogar_2480 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.8 %
• Parental protein coverage: 94.53 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ESQARQYLEKHRIPELLNYLTSVLLFFRPEK-PREYLITILERLRIAKVTGVAFPFFMDNSNIVAMFEMM
          ESQ.RQ.LEKH.IPELLNYLTSVLLFF.PEK..REYLI..LERLRIAK.TG.AF..F.DNSNI.AMF.MM
Retrocopy ESQTRQDLEKHQIPELLNYLTSVLLFFWPEK>TREYLISLLERLRIAKITGGAFLVFTDNSNIIAMFAMM

Parental  D-PSKRGTISFMQFKEALQTLGLCTVDEDLKDDGRGISLDKFRD--EVNKRTQEI
          D.PSKRGTISF...KEALQTLGLCT..EDLKDDG.GIS.D......EVNKRTQEI
Retrocopy D<PSKRGTISFV*CKEALQTLGLCTANEDLKDDGHGIS*DELFQT*EVNKRTQEI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2480 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000018257	1 retrocopy	retro_mputfur_1356,
Otolemur garnettii	ENSOGAG00000000454	1 retrocopy	retro_ogar_2480 ,
Tupaia belangeri	ENSTBEG00000005996	4 retrocopies	retro_tbel_1203, retro_tbel_1564, retro_tbel_377, retro_tbel_378,
Tursiops truncatus	ENSTTRG00000001481	1 retrocopy	retro_ttru_796,