>retro_ogar_2493
CGCACGTCGCTACCAGACGAGATGGAATCCCATGCTGCCGATGCCGTCAAGTCGCCCGAAAGTGATGTGGCCGCGTGCGA
GCCGGAGCCTCTCGGAAAGCAACCGGAGAGCCTGCCTTTGCTGGAGTTTGTCGGCGAGGCCGGTAACGGCTCCAGCACTG
AAGGGTCGCTGCCTTCCACACCTCCCCCAGTAGAGGAGGATGATGAGTTATACCGGCAGTCGCTGGAGATCATCTCTCGG
TACCTTTGGGAGCAGGCGACCGGCACCAAGGATGCGAAGCCAATGAGCATCAGGGCAGGAGGCTCCAGGAAGGCGCTGGA
GACCCTGCGCCGCGTCGGGGACGAGGTGCAGCGCAACCACGAGATAGCCTTCCAAGGCATGCTTCGCAGACTGGACATCA
AAACCGGCGAGGATATCAAATCTTTGTCTCGAGTGATGGTCCATGTTTTCAGTTACGGCATAACAAATTGGGGCAGGATC
GTGACCCTAATTTCTTTTGGTGGCTTTGTGGCCAAGCACCTGAAGGCCATAAACCAAGAAAGCTACGTCGAACCGCTAGC
AGAAAATATCGCAGATGTCCTTGTGAGGGCAAAACGAGACTGGCTAGTCAAACAACGAGGCTGGGATGGCTTTGTGGAGT
TCTTCCACCTGGAAGACATGGAAAGCAGCGTCAGAAACGTGCTGCTGGCTTTCGCAGGTGTTGCTGGAGTAGGAGCTGGT
TTGGCCTATCTAATAAGA
ORF - retro_ogar_2493 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.14 % |
Parental protein coverage: |
70.57 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | RAAPREEMEAPAADAIMSPEDELDGYEPEPLGKRPAVLPLLELVGEASNGPSTDGSLPSTPPPAEEEEDE |
| R.....EME..AADA..SPE......EPEPLGK.P..LPLLE.VGEA.NG.ST.GSLPSTPPP.EE..DE |
Retrocopy | RTSLPDEMESHAADAVKSPESDVAACEPEPLGKQPESLPLLEFVGEAGNGSSTEGSLPSTPPPVEED-DE |
|
Parental | LYRQSLEIISRYLREQATGAKDAKPMGRAGAASRKALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDV |
| LYRQSLEIISRYL.EQATG.KDAKPM......SRKALETLRRVGD.VQRNHE.AFQGMLR.LDIK...D. |
Retrocopy | LYRQSLEIISRYLWEQATGTKDAKPMSIRAGGSRKALETLRRVGDEVQRNHEIAFQGMLRRLDIKTGEDI |
|
Parental | KSLSRVMVHVFSDGVTNWGRIVTLISFGAFVAKHLKSINQESCIEPLAESITDVLVRTKRDWLVKQRGWD |
| KSLSRVMVHVFS.G.TNWGRIVTLISFG.FVAKHLK.INQES..EPLAE.I.DVLVR.KRDWLVKQRGWD |
Retrocopy | KSLSRVMVHVFSYGITNWGRIVTLISFGGFVAKHLKAINQESYVEPLAENIADVLVRAKRDWLVKQRGWD |
|
Parental | GFVEFFHVEDLEGGIRNVLLAFAGVAGVGAGLAYLIR |
| GFVEFFH.ED.E...RNVLLAFAGVAGVGAGLAYLIR |
Retrocopy | GFVEFFHLEDMESSVRNVLLAFAGVAGVGAGLAYLIR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2493 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
5 retrocopies.