RetrogeneDB ID: | retro_ogar_2872 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873674.1:3841465..3843171(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSOGAG00000032992 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MAP3K11 | ||
| Ensembl ID: | ENSOGAG00000014085 | ||
| Aliases: | None | ||
| Description: | mitogen-activated protein kinase kinase kinase 11 [Source:HGNC Symbol;Acc:6850] |
Retrocopy-Parental alignment summary:
>retro_ogar_2872
TCCTCCAGGAGAATGGCCGTGGGAAAGATTTCTTTGATGATCGAGTTCCTGCCTGTAGCCTACAGATATGCAGAGACACT
CTCAGTCTGGAGCTTTGGGGTGCTGCGATGGGAACTGCTAATTAGGGAGGTGCCCTACCGTGGCATTGACTGTCTTGCTG
TGGCCTATGGCGTGTCTGTTAACAAGCTCAAACTGCCCATCCCATCTACCTGCCCCGAGACCTTCGCACAGCTCATGGCC
GAGTCCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTGTCTCCATCTTGCAGCAGTTGGAGGCGCTAGAGGCGCAGGT
CCTATGGGAAATGCCGCTGGACTCCTTCCATTTCATGCAGGAAGGCTGGAAACGCGAAATCCAGGGCCTCTTCGCGGAGC
TGTGGGCCAAGGAAAAAGAACTACTGAGTCGCGAGCAGGAGCTGATGCAGGTGGCGCGAGAACAGCGGTCACAGGCTGAG
CAGCTACGGTGGCGCAAGCAACCGTTGGCCCAGTGGGAGCTAGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCA
GGTGGACCGCGAACGGCCGCACGTGCGGCACCACCGCGGCACCTTCAAGCAAAGCAAGCTCAGGGCGCGCGACGGCGGCG
AGCGCATAAGCATACCTCTTGACTTCAAGCACCGATTTACCGTGCAGGCCTCCCCTGGCCTTGACTGGAGAAGAAACGTC
TTTGAGGTGGGAGCTGGAGATTCGCCCACTTTCCCACGGTTCTGGGCCATACAGTTGGGGCCTGCAGAGCCAGGCCAGGC
ATGGGGCCGCCAGTCCCCTCGCCGTCTGGAAGACTCAAGCAATGGAGAGAGGTGAGCTCGCTGGGCCTGGGGTCCCAGTT
CCCCCAAGCCTGGGAAAACCCAGAATGGGAGGAGAAGATGCCGCATGGACGAAGCCACTTGGTACTTGGATTCAGATGAC
TCCTCCCACTTAGGATCTCTTTCCACACCCCCAACACTAAATGGTAACCCCTCACGTCCAAGCCCAGAACCTGAGAAGCC
AAAGCGGCCCAGCCCAGCAGAGTGCCACAGCAGCTCCGGGACACCCAGGCTGATTGAGCCTGCACTGCTGCGTGGCACTG
CCCTGCTCGCCTCACTCGGCCTGGGCCAGGACCAGCAGCCTCCAGGGAGCCATGAGCGTGGGGAATCCCCGCTGATGCCC
CATACACTGGTGCCCACACCATGGCCTGCCGAGCTGCCCCCTTCACCACTTGTGTGCCTCTCACCCAAGGTGCTGGGTAC
CCCACCCACCCCTGCACCTCTGCTGCTGGACCTGGGTGTCCCTGCAGGCCAGCGGTCAGCCAAGAGCCCCCGGCATGAGG
AGGAGACACGTGGAGGCACTGTCTCACCTCCACCAGGGACATCATGCTCTGCTCCTGGTACCCCAGGCACCCCACGCTAC
TGCCTCTGGGCCTCATCAGTTGACCTCGGCCCTCACCCCTCCACAGCAGCATTGACCCATGGAGCTTTGTGTCAGCTGGG
CCATGGCCTTCACCCCTGCCCTCACCACAACCTGCACCCCGCCGCGCCCCCTGGACCTTATTTCCAGACTCAGACCCCTT
CTGGGACTCCCCACCTGTCAACCCCTTCCGGGGAGGCCCCCAGGACTGCAGAGCACAAACCAAAGACAAGGGTGCCCAGG
CCCCATGGACACCGGAAGCTGGGCCT
ORF - retro_ogar_2872 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 84.56 % |
| Parental protein coverage: | 67.34 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | TTQMSAAGTYAWMAPEVIKASTFSKGSDVWSFGVLLWELLTGEVPYRGIDCLAVAYGVAVNKLTLPIPST |
| .....A.G....M......A........VWSFGVL.WELL..EVPYRGIDCLAVAYGV.VNKL.LPIPST | |
| Retrocopy | SSRRMAVGKISLMIEFLPVAYRYAETLSVWSFGVLRWELLIREVPYRGIDCLAVAYGVSVNKLKLPIPST |
| Parental | CPEPFAQLMADCWAQDPHRRPDFASILQQLEALEAQVLREMPRDSFHSMQEGWKREIQGLFDELRAKEKE |
| CPE.FAQLMA..WAQDPHRRP.F.SILQQLEALEAQVL.EMP.DSFH.MQEGWKREIQGLF.EL.AKEKE | |
| Retrocopy | CPETFAQLMAESWAQDPHRRPHFVSILQQLEALEAQVLWEMPLDSFHFMQEGWKREIQGLFAELWAKEKE |
| Parental | LLSREEELTRAAREQRSQAEQLRRREHLLAQWELEVFERELTLLLQQVDRERPHVRRRRGTFKRSKLRAR |
| LLSRE.EL...AREQRSQAEQLR.R...LAQWELEVFERELTLLLQQVDRERPHVR..RGTFK.SKLRAR | |
| Retrocopy | LLSREQELMQVAREQRSQAEQLRWRKQPLAQWELEVFERELTLLLQQVDRERPHVRHHRGTFKQSKLRAR |
| Parental | DGGERISMPLDFKHRITVQASPGLDRRRNVFEVGAGDSPTFPRFRAIQLEPAEPGQAWGRQSPRRLEDSS |
| DGGERIS.PLDFKHR.TVQASPGLD.RRNVFEVGAGDSPTFPRF.AIQL.PAEPGQAWGRQSPRRLEDSS | |
| Retrocopy | DGGERISIPLDFKHRFTVQASPGLDWRRNVFEVGAGDSPTFPRFWAIQLGPAEPGQAWGRQSPRRLEDSS |
| Parental | NGERRACWAWGPSSPKPGEAQNGRRRSRMDEATWYLDSDDSSPLGSPSTPPTLNGNPSRPSPEPEEPKRP |
| NGER.A.WAWGPSSPKPG..QNGRRR.RMDEATWYLDSDDSS.LGS.STPPTLNGNPSRPSPEPE.PKRP | |
| Retrocopy | NGER*ARWAWGPSSPKPGKTQNGRRRCRMDEATWYLDSDDSSHLGSLSTPPTLNGNPSRPSPEPEKPKRP |
| Parental | SPAERSSSSGTPRLIERALLRGTALLASLGLGRDLQPPGSRERGEPPLTPPTLVPAPCSAELSPSPLVCL |
| SPAE..SSSGTPRLIE.ALLRGTALLASLGLG.D.QPPGS.ERGE.PL.P.TLVP.P..AEL.PSPLVCL | |
| Retrocopy | SPAECHSSSGTPRLIEPALLRGTALLASLGLGQDQQPPGSHERGESPLMPHTLVPTPWPAELPPSPLVCL |
| Parental | SPKVLGTPPTPAPLLLDLGVPAGQRSAKSPRREEETRGGTVSPPPGTSRSAPGTPGTPR-SPPLSLISRP |
| SPKVLGTPPTPAPLLLDLGVPAGQRSAKSPR.EEETRGGTVSPPPGTS.SAPGTPGTPR...PL.LIS.P | |
| Retrocopy | SPKVLGTPPTPAPLLLDLGVPAGQRSAKSPRHEEETRGGTVSPPPGTSCSAPGTPGTPR<LLPLGLIS*P |
| Parental | RPSPLRSRIDPWSFVSAGPRPSPLPSPQPVPRRAPWTLFPDSDPFWDSPPVNPFRGGPQDCRAQTKDMGA |
| RPSPL.S.IDPWSFVSAGP.PSPLPSPQP.PRRAPWTLFPDSDPFWDSPPVNPFRGGPQDCRAQTKD.GA | |
| Retrocopy | RPSPLHSSIDPWSFVSAGPWPSPLPSPQPAPRRAPWTLFPDSDPFWDSPPVNPFRGGPQDCRAQTKDKGA |
| Parental | QAPWTPEAGP |
| QAPWTPEAGP | |
| Retrocopy | QAPWTPEAGP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2872 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000014085 | 1 retrocopy |
retro_ogar_2872 ,
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