RetrogeneDB ID:

retro_ogar_306

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:AAQR03195312.1:1661..2024(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000030871
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_306
TTCCACCGCAACTAGTTCACCCCACTGAAGCTACAGGAGCTGGAGAGCCTTTTCCAGTGCACTCAGTACCCCATGGGTCT
GTGTGAAAGGATCTTGCAAGATGCTTTGGTGTGACTGTCTATAGAGTGCAGGTTTGGTTTAAGAATAGGAGAGCAAGGTG
GAAAAGAATGCCAGAGGGCATTAAGTTTCAGAAATAAGCTCCCCTTGGCTCTGGGCCACTCTGTCATGATGGTTGCAGGT
GGCCTGCCTCCTGTCATGCTTACCCAGGATCAGGATGGGAGATTGGTTCTTCTGCAGCCAATACCCCTGGGGCTGCCAAT
AGTGCTCCCAACACATCCTCATCTGTTCATACCTCCTCTGCCC

ORF - retro_ogar_306 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 57.72 %
Parental protein coverage: 52.61 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalFRRPAFTPPQVQELENIFQRIQYP-DGSMRKDLARRLGVTENRVQVWFKNRRARWRRH-QRASVFRSMPY
F.R..FTP...QELE..FQ..QYP..GS..KDLAR..GVT..RVQVWFKNRRARW.R..QRA..FR....
RetrocopyFHRN*FTPLKLQELESLFQCTQYP<HGSV*KDLARCFGVTVYRVQVWFKNRRARWKRM>QRALSFRNKLP
ParentalVDVGHSFMMSPSVPPPVMLTHDHEGRYLLLQPAPMLPPIMPPAYPPLFMPPMP
...GHS.MM.....PPVMLT.D..GR..LLQP.P...PI..P..P.LF.PP.P
RetrocopyLALGHSVMMVAGGLPPVMLTQDQDGRLVLLQPIPLGLPIVLPTHPHLFIPPLP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_306 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species Parental gene accession Retrocopies number
Otolemur garnettii ENSOGAG00000030871 2 retrocopies
retro_ogar_306 , retro_ogar_384,
Otolemur garnettii ENSOGAG000000309421 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000052971 retrocopy



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