RetrogeneDB ID: retro_ogar_3074

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873710.1:1912258..1912677(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TOLLIP
• Ensembl ID: ENSOGAG00000000520
• Aliases: None
• Description: toll interacting protein [Source:HGNC Symbol;Acc:16476]

Sequence

>retro_ogar_3074
ATCACCATGCTCGAGTCCCTGAAGCAAGAGGGTGCAGTGGAGGACAACTGGCACTGTCTGAGTGGGTGGCTGGGTGATGA
CGAGGAGGGCGTGATCAACCTGGTCATGTCCTACTCGCTGTTGCCGCGCGCCATGGTGATGCCACCTCAACCGGTGGTCT
GATGCCGACCATGTACCAGCAGGGCGTTGGCTACGTGCCCATCACAAGGATGCCTGCCGTCTGCAGCCCCGGCATGATAC
CTATAGCCACGCCACTGTCAGCCATGAGTGCCCAGCCTTGCTGCAGCAAGGAGGATCTGAAAGCCATCCAGGACATGTTT
CCCAACATGGACGGGAAGGATATCCACTCTGTGCTGGAAGCCCAGAGAGGGAACAAGGACACTGCCATCAACTCCCTGCT
TCAGATGGGTGAGGAGTCA

Alignment

ORF - retro_ogar_3074 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.27 %
• Parental protein coverage: 50.91 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ITIPESLKQEGAVEDKWHCLSGRQGDDKEGMINLVMSYSLLPAAMVMPPQPVV-LMPTVYQQGVGYVPIA
          IT..ESLKQEGAVED.WHCLSG..GDD.EG.INLVMSYSLLP.AMVMPPQPVV.LMPT.YQQGVGYVPI.
Retrocopy ITMLESLKQEGAVEDNWHCLSGWLGDDEEGVINLVMSYSLLPRAMVMPPQPVV<LMPTMYQQGVGYVPIT

Parental  GMPAVCSPGMMPVAVPPPAMSAQPRCSEEDLKAIQDMFPNMDREVIRSVLEAQRGNKDAAINSLLQMGED
          .MPAVCSPGM.P.A.P..AMSAQP.CS.EDLKAIQDMFPNMD...I.SVLEAQRGNKD.AINSLLQMGE.
Retrocopy RMPAVCSPGMIPIATPLSAMSAQPCCSKEDLKAIQDMFPNMDGKDIHSVLEAQRGNKDTAINSLLQMGEE

Parental  S
          S
Retrocopy S

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3074 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000000520	1 retrocopy	retro_ogar_3074 ,