RetrogeneDB ID: retro_ogar_3403

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873819.1:369475..370566(+)
• Located in intron of: ENSOGAG00000029806

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DUSP7
• Ensembl ID: ENSOGAG00000032809
• Aliases: None
• Description: dual specificity phosphatase 7 [Source:HGNC Symbol;Acc:3073]

Sequence

>retro_ogar_3403
CTGCCAGGCCACAGCTCCAGCTGGGAGATAGAGCCAGAAAGTGGCAAGGCCAGGAAGGATCCACCCTGCTCAACTGCCGA
CCACCTGGGCTCCTCAAGTCATTGCACATCAAAATGGCCATCAACCTAGCCATCCCAGGGCTTCAGGCTGTACTGTCCGC
TCTAGGGCAACCTGCCCATCTGCTCCATCCTCCCCAACCACGCCAACAAGGAGCCTTTCGCCACACTCTGCAAGGCAGCC
ACTGTGCTGCTGGAGGATGAGGCCACCGCCCAGTGGCAGCCCGAACCCAGCACTCCAGCCTCGGTGCCGGGTGTGCTATT
ATAGAAGCTGTGCAATGATGGCTGCTGGGCCTATGTGGTTTCAACAAGTTCCAAACAGAGTCCCCAGAGCACTGCGAGAC
CAACGTGGACAGCTCGTCCTCACCCAGTAGCTCACCACCCACCTCTGTGCTGGGCCTGGAGGGCCTAGGCATCAGCTCTG
ACTGCTCAGACCGCGAGTCAGACCCAGAGCTGCCTAGCAGTGCCACTGAGTCAGATGGCAGCCCTGTGCCATCTACCAAC
CAGGCTTCCCTGACCAGATCCTGTCCTGCCTCTACCTGGGCTGCACCAAGGACTCCATCAATTTGGATGTGCTTGGCAAG
TATGGTATCAAGTATTTCCTCGATGTCATAACCAACTTACCCAATGCCTTCTAGCATGGTGGCGAGTTCACCTACAAGCA
GACCCCCAATCTCTGACCACTGGAGCCAGAACCTCTCCTGGTTCTTCCCTGAGGCCGTCAACTTCATTGGCGAGGTCTGC
TCCAGGAAGTGTGGTGTCCTGGAGCACTGCCTGGCAGGCATCAGCCATTCAGTGAGAGTTACTGTGGCCTAGCTGATGCA
GAAGATGAACCTGTCACTCAGTGATGCCGTGACTTTGTCAAGAGGAAAAAGTCCAACATCTCCCCCAACTTCAACTTCAT
GTGGCAGCTGCTGGACTTTGAGTGGACGCTGGGGCCAAGCAGCCCATGCCACAACCATGCTGCCCAGTGAGCAGCTCTAC
TTCTCCACACCCACCAATCACAACCTGTTCCCACTCAATACGCTCCAGTCC

Alignment

ORF - retro_ogar_3403 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.05 %
• Parental protein coverage: 99.73 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 7

Retrocopy - Parental Gene Alignment:

Parental  MPCKSAEWLQEELEAR-GGASLLLLDCRPHELFESSHIETAINLAIP-GLMLRRLRKGNLPIRSIIPNHA
          .P..S..W..E......G.....LL.CRP..L..S.HI..AINLAIP.G..L.....GNLPI.SI.PNHA
Retrocopy LPGHSSSWEIEPESGK<GQEGSTLLNCRPPGLLKSLHIKMAINLAIP>GFRLYCPL*GNLPICSILPNHA

Parental  DKERFATRCKAATVLLYDEATAEWQPEPGAPASVLGLLLQKLRDDGCQAYYLQ-GGFNKFQTEYSEHCET
          .KE.FAT.CKAATVLL.DEATA.WQPEP..PASV.G.LL.KL..DGC.AY......F.....E..E....
Retrocopy NKEPFATLCKAATVLLEDEATAQWQPEPSTPASVPGVLL*KLCNDGCWAYVVS<NKFQTESPEHCETNVD

Parental  NVDSSSSPSSSPPTSVLGLGGLRISSDCSDGESDRELPSSATESDGSPVPSS-QPAFPVQILPYLYLGCA
          ...S.SS...SPPTSVLGL.GL.ISSDCSD.ESD.ELPSSATESDGSPVPS..QP.FP.QIL..LYLGC.
Retrocopy SSSSPSS---SPPTSVLGLEGLGISSDCSDRESDPELPSSATESDGSPVPST<QPGFPDQILSCLYLGCT

Parental  KDSTNLDVLGKYGIKYILNVTPNLPNAFEHGGEFTYKQI-PISDHWSQNLSQFFPEAISFIDEARSKKCG
          KDS.NLDVLGKYGIKY.L.V..NLPNAF.HGGEFTYKQ..PISDHWSQNLS.FFPEA..FI.E..S.KCG
Retrocopy KDSINLDVLGKYGIKYFLDVITNLPNAF*HGGEFTYKQT>PISDHWSQNLSWFFPEAVNFIGEVCSRKCG

Parental  VLVHCLAGISRSVTVTVAYLMQKMNLSLNDAY-DFVKRKKSNISPNFNFMGQLLDFERTLGLSSPCDNHA
          VL.HCLAGIS.SV.VTVA.LMQKMNLSL.DA..DFVKRKKSNISPNFNFM.QLLDFE.TLG.SSPC.NHA
Retrocopy VLEHCLAGISHSVRVTVA*LMQKMNLSLSDAV<DFVKRKKSNISPNFNFMWQLLDFEWTLGPSSPCHNHA

Parental  -PSEQLYFSTPTNHNLFPLNTLES
          .PSEQLYFSTPTNHNLFPLNTL.S
Retrocopy >PSEQLYFSTPTNHNLFPLNTLQS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3403 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000032809	3 retrocopies	retro_ogar_3403 , retro_ogar_3451, retro_ogar_3473,